Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 RPL30P2-201ENST00000414021 291 ntBASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 AC073587.1-201ENST00000447093 876 ntBASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 AC140076.1-201ENST00000449897 361 ntBASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
VPS13DQ5THJ4 AL353678.1-201ENST00000422735 741 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AL035458.1-201ENST00000433096 585 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 RPL21P112-201ENST00000434403 463 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 NPM1P39-201ENST00000449818 867 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC015849.2-201ENST00000605738 409 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AL158196.1-201ENST00000616786 434 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 HMGN2P8-201ENST00000391458 268 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 BX276092.4-201ENST00000452056 248 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AP002884.2-201ENST00000471647 395 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 RPS4XP13-201ENST00000483219 789 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 SNORA70.19-201ENST00000516717 90 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC018552.3-201ENST00000567416 561 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 OR7A8P-201ENST00000595427 913 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 EIF1P6-201ENST00000600054 334 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC073325.2-201ENST00000339545 159 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 CD2-201ENST00000369477 478 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 U3.19-201ENST00000390893 196 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 RN7SKP222-201ENST00000410651 315 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 SETP5-201ENST00000437270 562 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 S100A11P1-201ENST00000477525 312 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC006946.3-201ENST00000609791 756 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC007318.2-201ENST00000620999 243 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC005183.1-201ENST00000603687 1979 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 GVINP1-202ENST00000531871 7271 ntBASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS13DQ5THJ4 AC097634.1-201ENST00000604491 2467 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 HLFP1-201ENST00000402375 499 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 RNU4-47P-201ENST00000410876 114 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 ELOCP23-201ENST00000452014 332 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 OR2AS2P-201ENST00000606902 342 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 MAPK10-362ENST00000641864 4484 ntBASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC2.15□□□□□ -2.06
VPS13DQ5THJ4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 RPL7P47-201ENST00000497299 556 ntBASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 OR2A20P-203ENST00000498397 1268 ntBASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 AL162574.2-201ENST00000614618 657 ntBASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 AC009237.17-201ENST00000618111 748 ntBASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS13DQ5THJ4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms