Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MIR7106-201ENST00000612419 65 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AC074140.1-201ENST00000621617 208 ntBASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC88AQ3V6T2 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 ARF4P3-201ENST00000397387 509 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AL031679.1-201ENST00000400616 525 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 HSPE1P8-201ENST00000406997 288 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AL645568.2-201ENST00000432815 1337 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 MTND2P25-201ENST00000449028 610 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AL133477.1-201ENST00000457472 514 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC004924.1-201ENST00000480160 781 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC118465.1-201ENST00000513820 1271 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC067852.3-201ENST00000589177 561 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC020914.4-201ENST00000597690 277 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 Z82195.1-201ENST00000604558 398 ntBASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.16□□□□□ -1.74
CCDC88AQ3V6T2 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 RN7SL93P-201ENST00000463035 293 ntBASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 AP000926.4-201ENST00000527351 454 ntBASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 AC087276.1-201ENST00000529659 480 ntBASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 AL121766.1-201ENST00000547436 487 ntBASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.15□□□□□ -1.74
CCDC88AQ3V6T2 Z83843.1-201ENST00000604070 3685 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 MRPS18BP2-201ENST00000434310 759 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC009263.1-201ENST00000441193 1239 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC112198.1-201ENST00000505369 1220 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC091826.1-201ENST00000514065 313 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC113192.3-201ENST00000529152 742 ntBASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
CCDC88AQ3V6T2 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 RNA5SP126-201ENST00000365092 109 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 AC006989.1-201ENST00000427212 131 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 RNVU1-4-201ENST00000612985 164 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 AC007998.5-201ENST00000622938 237 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 OR4G1P-202ENST00000641173 1788 ntBASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC88AQ3V6T2 SNORA54-201ENST00000384281 123 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 RPL7L1P1-201ENST00000448259 785 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AL121877.1-201ENST00000453704 622 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 CCDC75P1-201ENST00000469247 791 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 HMGB1P21-201ENST00000502313 581 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AL158062.1-201ENST00000619632 745 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 TNPO1P3-201ENST00000436471 2662 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 NMD3P1-201ENST00000439704 1488 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC027287.1-201ENST00000553115 1453 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 MTCO1P24-201ENST00000515438 1558 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 OTUD4P1-201ENST00000237841 3067 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 RNA5SP235-201ENST00000365411 114 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 Z98941.1-201ENST00000407764 100 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 RN7SKP247-201ENST00000411094 308 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 RNU2-22P-201ENST00000411266 212 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC002524.1-201ENST00000411687 547 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 MTND4P22-201ENST00000413116 1169 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 AC105272.1-201ENST00000438604 198 ntBASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC88AQ3V6T2 RFPL4AP5-201ENST00000514977 504 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms