Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.3□□□□□ -1.88
VCANP13611 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.3□□□□□ -1.88
VCANP13611 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.3□□□□□ -1.88
VCANP13611 AP000926.4-201ENST00000527351 454 ntBASIC3.3□□□□□ -1.88
VCANP13611 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.3□□□□□ -1.88
VCANP13611 CYP4A43P-201ENST00000568156 121 ntBASIC3.3□□□□□ -1.88
VCANP13611 ELF2P3-201ENST00000445099 1506 ntBASIC3.3□□□□□ -1.88
VCANP13611 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
VCANP13611 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.3□□□□□ -1.88
VCANP13611 AC005008.1-201ENST00000456151 612 ntBASIC3.3□□□□□ -1.88
VCANP13611 HIGD1AP13-201ENST00000509878 289 ntBASIC3.3□□□□□ -1.88
VCANP13611 PPBPP1-201ENST00000510807 373 ntBASIC3.3□□□□□ -1.88
VCANP13611 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.3□□□□□ -1.88
VCANP13611 AL392112.1-201ENST00000605115 829 ntBASIC3.3□□□□□ -1.88
VCANP13611 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VCANP13611 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VCANP13611 AC091179.1-201ENST00000461606 579 ntBASIC3.29□□□□□ -1.88
VCANP13611 AC010306.1-201ENST00000523223 1117 ntBASIC3.29□□□□□ -1.88
VCANP13611 AC009977.1-201ENST00000586015 570 ntBASIC3.29□□□□□ -1.88
VCANP13611 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VCANP13611 ASNSP1-201ENST00000518311 1939 ntBASIC3.29□□□□□ -1.88
VCANP13611 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.29□□□□□ -1.88
VCANP13611 U8.2-201ENST00000363156 134 ntBASIC3.29□□□□□ -1.88
VCANP13611 MOB1AP1-201ENST00000430903 535 ntBASIC3.29□□□□□ -1.88
VCANP13611 AC087312.1-201ENST00000471411 480 ntBASIC3.29□□□□□ -1.88
VCANP13611 HMGB3P13-201ENST00000511263 607 ntBASIC3.29□□□□□ -1.88
VCANP13611 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 DMD-211ENST00000378707 7410 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 AC108206.1-201ENST00000570186 4159 ntBASIC3.29□□□□□ -1.88
VCANP13611 IGKV2-36-201ENST00000519999 223 ntBASIC3.29□□□□□ -1.88
VCANP13611 AC026333.2-201ENST00000542164 106 ntBASIC3.29□□□□□ -1.88
VCANP13611 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.29□□□□□ -1.88
VCANP13611 AL133457.1-201ENST00000564251 987 ntBASIC3.29□□□□□ -1.88
VCANP13611 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.29□□□□□ -1.88
VCANP13611 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.29□□□□□ -1.88
VCANP13611 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.28□□□□□ -1.88
VCANP13611 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.28□□□□□ -1.88
VCANP13611 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.28□□□□□ -1.88
VCANP13611 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.28□□□□□ -1.88
VCANP13611 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
VCANP13611 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.28□□□□□ -1.88
VCANP13611 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
VCANP13611 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.28□□□□□ -1.88
VCANP13611 AL691447.1-201ENST00000419456 387 ntBASIC3.28□□□□□ -1.88
VCANP13611 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.28□□□□□ -1.88
VCANP13611 AC009852.2-201ENST00000567898 485 ntBASIC3.28□□□□□ -1.88
VCANP13611 ISCA1P3-201ENST00000577104 373 ntBASIC3.28□□□□□ -1.88
VCANP13611 AC026979.4-201ENST00000606555 645 ntBASIC3.28□□□□□ -1.88
VCANP13611 OR5AC4P-202ENST00000642086 985 ntBASIC3.28□□□□□ -1.88
VCANP13611 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VCANP13611 AL161781.1-201ENST00000354277 403 ntBASIC3.28□□□□□ -1.89
VCANP13611 MIR34A-201ENST00000385130 110 ntBASIC3.28□□□□□ -1.89
VCANP13611 NSRP1P1-201ENST00000444067 1693 ntBASIC3.28□□□□□ -1.89
VCANP13611 RPL23AP67-201ENST00000465341 474 ntBASIC3.28□□□□□ -1.89
VCANP13611 AC008565.1-201ENST00000509046 885 ntBASIC3.28□□□□□ -1.89
VCANP13611 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.28□□□□□ -1.89
VCANP13611 AC015712.3-201ENST00000559380 164 ntBASIC3.28□□□□□ -1.89
VCANP13611 AC010680.4-201ENST00000605334 543 ntBASIC3.28□□□□□ -1.89
VCANP13611 AC026790.2-201ENST00000606282 430 ntBASIC3.28□□□□□ -1.89
VCANP13611 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VCANP13611 DMD-205ENST00000359836 7339 ntTSL 5 BASIC3.27□□□□□ -1.89
VCANP13611 NCOA4P2-201ENST00000340589 1813 ntBASIC3.27□□□□□ -1.89
VCANP13611 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.27□□□□□ -1.89
VCANP13611 AC005332.5-201ENST00000591222 2919 ntBASIC3.27□□□□□ -1.89
VCANP13611 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VCANP13611 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VCANP13611 RN7SKP220-201ENST00000410611 288 ntBASIC3.27□□□□□ -1.89
VCANP13611 RNA5SP508-201ENST00000411327 119 ntBASIC3.27□□□□□ -1.89
VCANP13611 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.27□□□□□ -1.89
VCANP13611 AC096638.2-201ENST00000434965 711 ntBASIC3.27□□□□□ -1.89
VCANP13611 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.27□□□□□ -1.89
VCANP13611 TPT1P1-201ENST00000458495 518 ntBASIC3.27□□□□□ -1.89
VCANP13611 KLHL2P1-201ENST00000508691 521 ntBASIC3.27□□□□□ -1.89
VCANP13611 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
VCANP13611 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
VCANP13611 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms