Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ESRRAP1-201ENST00000400596 1257 ntBASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 AC120498.9-201ENST00000339021 3867 ntBASIC15.6■□□□□ 0.09
FOXA2Q9Y261 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 AC120498.8-201ENST00000614275 531 ntBASIC15.6■□□□□ 0.09
FOXA2Q9Y261 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 ZNF815P-204ENST00000434898 1737 ntBASIC15.6■□□□□ 0.09
FOXA2Q9Y261 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
FOXA2Q9Y261 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 AL138781.2-201ENST00000617896 1843 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 AL161938.1-201ENST00000569833 2180 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 KRT17P3-201ENST00000420566 1262 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 POM121L13P-201ENST00000422362 380 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 FAM201B-201ENST00000458407 597 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 RPS2P52-201ENST00000469610 820 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 MMAB-206ENST00000540016 945 ntTSL 3 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 TEX21P-204ENST00000641479 1693 ntBASIC15.59■□□□□ 0.09
FOXA2Q9Y261 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
FOXA2Q9Y261 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
FOXA2Q9Y261 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 AL121906.2-201ENST00000621597 723 ntBASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms