Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AL390955.1-201ENST00000428694 934 ntBASIC20.68■□□□□ 0.9
SIX4Q9UIU6 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 KRT8P9-201ENST00000558927 1449 ntBASIC20.68■□□□□ 0.9
SIX4Q9UIU6 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SIX4Q9UIU6 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 FAM207BP-201ENST00000447172 505 ntBASIC20.67■□□□□ 0.9
SIX4Q9UIU6 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 FITM1-202ENST00000559294 800 ntBASIC20.67■□□□□ 0.9
SIX4Q9UIU6 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX4Q9UIU6 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 MIR1238-201ENST00000408483 83 ntBASIC20.66■□□□□ 0.9
SIX4Q9UIU6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 KRT8P11-201ENST00000409686 1436 ntBASIC20.66■□□□□ 0.9
SIX4Q9UIU6 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX4Q9UIU6 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 AC096733.2-201ENST00000609937 1394 ntBASIC20.65■□□□□ 0.9
SIX4Q9UIU6 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 AC097488.1-201ENST00000507834 756 ntBASIC20.65■□□□□ 0.9
SIX4Q9UIU6 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX4Q9UIU6 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX4Q9UIU6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 AC087499.1-201ENST00000418141 1075 ntBASIC20.64■□□□□ 0.89
SIX4Q9UIU6 TSPY23P-201ENST00000440136 739 ntBASIC20.64■□□□□ 0.89
SIX4Q9UIU6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 AP005242.2-201ENST00000580065 1175 ntBASIC20.64■□□□□ 0.89
SIX4Q9UIU6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.64■□□□□ 0.89
SIX4Q9UIU6 AC073912.3-201ENST00000624414 853 ntBASIC20.64■□□□□ 0.89
SIX4Q9UIU6 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms