Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
IFT140Q96RY7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC32.1■■■□□ 2.73
IFT140Q96RY7 AC138894.3-201ENST00000603787 634 ntBASIC32.1■■■□□ 2.73
IFT140Q96RY7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC32.1■■■□□ 2.73
IFT140Q96RY7 TP73-AS1-207ENST00000624167 988 ntBASIC32.1■■■□□ 2.73
IFT140Q96RY7 AF228730.7-201ENST00000641842 219 ntBASIC32.1■■■□□ 2.73
IFT140Q96RY7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
IFT140Q96RY7 AC036111.1-201ENST00000533973 1582 ntBASIC32.09■■■□□ 2.73
IFT140Q96RY7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC32.09■■■□□ 2.73
IFT140Q96RY7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC32.09■■■□□ 2.73
IFT140Q96RY7 SLC25A1P1-201ENST00000528351 927 ntBASIC32.09■■■□□ 2.73
IFT140Q96RY7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
IFT140Q96RY7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC32.09■■■□□ 2.73
IFT140Q96RY7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
IFT140Q96RY7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 IL9RP2-201ENST00000423948 1312 ntBASIC32.08■■■□□ 2.73
IFT140Q96RY7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
IFT140Q96RY7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC32.08■■■□□ 2.73
IFT140Q96RY7 FEM1AP1-201ENST00000431297 1995 ntBASIC32.08■■■□□ 2.73
IFT140Q96RY7 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
IFT140Q96RY7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
IFT140Q96RY7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 AC104819.1-201ENST00000504587 486 ntBASIC32.07■■■□□ 2.72
IFT140Q96RY7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC32.07■■■□□ 2.72
IFT140Q96RY7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
IFT140Q96RY7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC32.07■■■□□ 2.72
IFT140Q96RY7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC32.06■■■□□ 2.72
IFT140Q96RY7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC32.06■■■□□ 2.72
IFT140Q96RY7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC32.06■■■□□ 2.72
IFT140Q96RY7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 BID-203ENST00000399765 1879 ntTSL 2 BASIC32.06■■■□□ 2.72
IFT140Q96RY7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
IFT140Q96RY7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC32.05■■■□□ 2.72
IFT140Q96RY7 AL157888.1-201ENST00000631930 593 ntBASIC32.05■■■□□ 2.72
IFT140Q96RY7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC32.05■■■□□ 2.72
IFT140Q96RY7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
IFT140Q96RY7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC32.05■■■□□ 2.72
IFT140Q96RY7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 GPAT2P1-201ENST00000444924 1672 ntBASIC32.04■■■□□ 2.72
IFT140Q96RY7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 MIR1233-2-201ENST00000408138 82 ntBASIC32.04■■■□□ 2.72
IFT140Q96RY7 MIR1233-1-201ENST00000408722 82 ntBASIC32.04■■■□□ 2.72
IFT140Q96RY7 SAPCD2P3-201ENST00000455031 850 ntBASIC32.04■■■□□ 2.72
IFT140Q96RY7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
IFT140Q96RY7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
IFT140Q96RY7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
IFT140Q96RY7 AL391807.1-203ENST00000604392 2365 ntBASIC32.04■■■□□ 2.72
IFT140Q96RY7 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC32.04■■■□□ 2.72
IFT140Q96RY7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC32.04■■■□□ 2.72
IFT140Q96RY7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
IFT140Q96RY7 REXO1L6P-202ENST00000619970 1078 ntBASIC32.03■■■□□ 2.72
IFT140Q96RY7 AC233723.2-201ENST00000623798 2106 ntBASIC32.03■■■□□ 2.72
IFT140Q96RY7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC32.03■■■□□ 2.72
IFT140Q96RY7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
IFT140Q96RY7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
IFT140Q96RY7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms