Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CCDC140Q96MF4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 HTR7P1-201ENST00000538670 1336 ntBASIC14.94□□□□□ -0.02
CCDC140Q96MF4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 AC141586.3-201ENST00000562166 1838 ntBASIC14.94□□□□□ -0.02
CCDC140Q96MF4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 AL160286.2-201ENST00000567150 934 ntBASIC14.94□□□□□ -0.02
CCDC140Q96MF4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC140Q96MF4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 NIFKP9-201ENST00000419265 221 ntBASIC14.93□□□□□ -0.02
CCDC140Q96MF4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 GCSHP5-201ENST00000443090 522 ntBASIC14.93□□□□□ -0.02
CCDC140Q96MF4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 AC142381.4-202ENST00000563973 229 ntBASIC14.93□□□□□ -0.02
CCDC140Q96MF4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC140Q96MF4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AL158047.1-201ENST00000445918 881 ntBASIC14.92□□□□□ -0.02
CCDC140Q96MF4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AP002982.1-201ENST00000492365 877 ntBASIC14.92□□□□□ -0.02
CCDC140Q96MF4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 RARRES2P10-201ENST00000564312 460 ntBASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AL353708.3-201ENST00000610272 989 ntBASIC14.92□□□□□ -0.02
CCDC140Q96MF4 AL445675.2-201ENST00000620291 557 ntBASIC14.92□□□□□ -0.02
CCDC140Q96MF4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
CCDC140Q96MF4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms