Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 AC008622.2-201ENST00000617006 1229 ntBASIC19.66■□□□□ 0.74
CHFRQ96EP1 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CHFRQ96EP1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CHFRQ96EP1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 PRSS44-201ENST00000515154 1146 ntBASIC19.65■□□□□ 0.74
CHFRQ96EP1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 AL512604.3-201ENST00000569583 964 ntBASIC19.65■□□□□ 0.74
CHFRQ96EP1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 AC140113.3-201ENST00000605663 199 ntBASIC19.65■□□□□ 0.74
CHFRQ96EP1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHFRQ96EP1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.65■□□□□ 0.74
CHFRQ96EP1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHFRQ96EP1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 HOMER2P1-201ENST00000455653 964 ntBASIC19.64■□□□□ 0.73
CHFRQ96EP1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.64■□□□□ 0.73
CHFRQ96EP1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 AL031432.5-201ENST00000641059 760 ntBASIC19.64■□□□□ 0.73
CHFRQ96EP1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHFRQ96EP1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.64■□□□□ 0.73
CHFRQ96EP1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 AC005332.1-201ENST00000577698 1310 ntBASIC19.63■□□□□ 0.73
CHFRQ96EP1 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.63■□□□□ 0.73
CHFRQ96EP1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 AL671277.2-201ENST00000458060 996 ntBASIC19.63■□□□□ 0.73
CHFRQ96EP1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 MIR4674-201ENST00000582457 87 ntBASIC19.63■□□□□ 0.73
CHFRQ96EP1 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHFRQ96EP1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.63■□□□□ 0.73
CHFRQ96EP1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CHFRQ96EP1 AC116407.4-201ENST00000623319 1061 ntBASIC19.62■□□□□ 0.73
CHFRQ96EP1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHFRQ96EP1 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.62■□□□□ 0.73
CHFRQ96EP1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms