Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TSPY7P-201ENST00000431358 1114 ntBASIC17.34■□□□□ 0.37
CPNE4Q96A23 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 NUDT16P1-203ENST00000513809 620 ntBASIC17.34■□□□□ 0.37
CPNE4Q96A23 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.34■□□□□ 0.37
CPNE4Q96A23 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPNE4Q96A23 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.33■□□□□ 0.37
CPNE4Q96A23 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPNE4Q96A23 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPNE4Q96A23 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPNE4Q96A23 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.33■□□□□ 0.37
CPNE4Q96A23 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 AL596275.1-201ENST00000423464 877 ntBASIC17.33■□□□□ 0.36
CPNE4Q96A23 AC004980.1-204ENST00000429707 299 ntBASIC17.33■□□□□ 0.36
CPNE4Q96A23 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 AL160286.2-201ENST00000567150 934 ntBASIC17.33■□□□□ 0.36
CPNE4Q96A23 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CPNE4Q96A23 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPNE4Q96A23 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 TREX1-205ENST00000625293 1783 ntBASIC17.32■□□□□ 0.36
CPNE4Q96A23 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPNE4Q96A23 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.32■□□□□ 0.36
CPNE4Q96A23 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 ZNF815P-204ENST00000434898 1737 ntBASIC17.31■□□□□ 0.36
CPNE4Q96A23 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPNE4Q96A23 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.31■□□□□ 0.36
CPNE4Q96A23 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms