Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 CCR12P-201ENST00000446203 998 ntBASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 AC063952.2-201ENST00000498792 1227 ntBASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 FAM87A-204ENST00000613235 858 ntBASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.37■□□□□ 0.69
HDDC3Q8N4P3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HDDC3Q8N4P3 KRT8P41-201ENST00000533985 1514 ntBASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 SLC25A1P2-201ENST00000430693 912 ntBASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 TCF3P1-201ENST00000423021 1937 ntBASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.35■□□□□ 0.69
HDDC3Q8N4P3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 HMGA1P5-201ENST00000412453 271 ntBASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 KRT18P56-201ENST00000507275 550 ntBASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HDDC3Q8N4P3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HDDC3Q8N4P3 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HDDC3Q8N4P3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms