Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLIP4Q8N3C7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CLIP4Q8N3C7 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 RPS2P52-201ENST00000469610 820 ntBASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.04■□□□□ 0.48
CLIP4Q8N3C7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLIP4Q8N3C7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLIP4Q8N3C7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms