Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 AF186996.4-201ENST00000467186 377 ntBASIC18.8■□□□□ 0.6
RIF1Q5UIP0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 AL390719.2-201ENST00000606993 987 ntBASIC18.8■□□□□ 0.6
RIF1Q5UIP0 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RIF1Q5UIP0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 MIR3197-201ENST00000582241 73 ntBASIC18.79■□□□□ 0.6
RIF1Q5UIP0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RIF1Q5UIP0 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 AC106730.1-201ENST00000566722 1090 ntBASIC18.78■□□□□ 0.6
RIF1Q5UIP0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.78■□□□□ 0.6
RIF1Q5UIP0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 AC005229.4-201ENST00000610085 2198 ntBASIC18.78■□□□□ 0.6
RIF1Q5UIP0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.78■□□□□ 0.6
RIF1Q5UIP0 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RIF1Q5UIP0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.77■□□□□ 0.59
RIF1Q5UIP0 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RIF1Q5UIP0 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RIF1Q5UIP0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RIF1Q5UIP0 AC139887.3-201ENST00000568585 713 ntBASIC18.77■□□□□ 0.59
RIF1Q5UIP0 AC134684.3-201ENST00000641758 218 ntBASIC18.77■□□□□ 0.59
RIF1Q5UIP0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
RIF1Q5UIP0 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 RPSAP43-201ENST00000402237 625 ntBASIC18.76■□□□□ 0.59
RIF1Q5UIP0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RIF1Q5UIP0 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.75■□□□□ 0.59
RIF1Q5UIP0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RIF1Q5UIP0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RIF1Q5UIP0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms