Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNFT1Q5M7Z0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 CA15P1-201ENST00000481698 905 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 YBX1P2-201ENST00000489612 999 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 AC022616.7-201ENST00000525383 220 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 AP003041.3-201ENST00000527151 707 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 AC141257.4-201ENST00000634557 245 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 AC136944.6-201ENST00000634818 245 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 AC104417.2-201ENST00000562989 1793 ntBASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNFT1Q5M7Z0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNFT1Q5M7Z0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 RNF152P1-201ENST00000397754 604 ntBASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 AC011558.1-201ENST00000623459 338 ntBASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNFT1Q5M7Z0 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms