Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 EGLN1P1-201ENST00000531623 762 ntBASIC25.6■■□□□ 1.69
COL3A1P02461 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
COL3A1P02461 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC25.6■■□□□ 1.69
COL3A1P02461 AC092338.2-201ENST00000568827 1415 ntBASIC25.6■■□□□ 1.69
COL3A1P02461 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC25.6■■□□□ 1.69
COL3A1P02461 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 HIST1H2APS4-201ENST00000362070 348 ntBASIC25.6■■□□□ 1.69
COL3A1P02461 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC25.6■■□□□ 1.69
COL3A1P02461 TSPY21P-201ENST00000433481 731 ntBASIC25.6■■□□□ 1.69
COL3A1P02461 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.6■■□□□ 1.69
COL3A1P02461 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC25.6■■□□□ 1.69
COL3A1P02461 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC25.59■■□□□ 1.69
COL3A1P02461 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL3A1P02461 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC25.59■■□□□ 1.69
COL3A1P02461 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC25.59■■□□□ 1.69
COL3A1P02461 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL3A1P02461 ECEL1P2-202ENST00000465689 757 ntBASIC25.59■■□□□ 1.69
COL3A1P02461 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.59■■□□□ 1.69
COL3A1P02461 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL3A1P02461 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL3A1P02461 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC25.58■■□□□ 1.69
COL3A1P02461 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
COL3A1P02461 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC25.58■■□□□ 1.69
COL3A1P02461 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
COL3A1P02461 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL3A1P02461 AC007663.1-201ENST00000438948 1240 ntBASIC25.58■■□□□ 1.69
COL3A1P02461 FAM210CP-201ENST00000445714 574 ntBASIC25.58■■□□□ 1.69
COL3A1P02461 CA15P1-201ENST00000481698 905 ntBASIC25.58■■□□□ 1.69
COL3A1P02461 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.58■■□□□ 1.69
COL3A1P02461 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC25.58■■□□□ 1.69
COL3A1P02461 AC010203.1-204ENST00000548782 407 ntBASIC25.58■■□□□ 1.69
COL3A1P02461 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
COL3A1P02461 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.58■■□□□ 1.69
COL3A1P02461 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC25.58■■□□□ 1.69
COL3A1P02461 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL3A1P02461 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC25.57■■□□□ 1.68
COL3A1P02461 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25.57■■□□□ 1.68
COL3A1P02461 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
COL3A1P02461 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL3A1P02461 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC25.57■■□□□ 1.68
COL3A1P02461 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC25.57■■□□□ 1.68
COL3A1P02461 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.57■■□□□ 1.68
COL3A1P02461 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL3A1P02461 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL3A1P02461 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL3A1P02461 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL3A1P02461 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL3A1P02461 TBC1D3P2-202ENST00000577902 1649 ntBASIC25.56■■□□□ 1.68
COL3A1P02461 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
COL3A1P02461 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.56■■□□□ 1.68
COL3A1P02461 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC25.56■■□□□ 1.68
COL3A1P02461 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC25.56■■□□□ 1.68
COL3A1P02461 MIR4674-201ENST00000582457 87 ntBASIC25.56■■□□□ 1.68
COL3A1P02461 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
COL3A1P02461 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
COL3A1P02461 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL3A1P02461 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL3A1P02461 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC25.55■■□□□ 1.68
COL3A1P02461 SLC25A1P2-201ENST00000430693 912 ntBASIC25.55■■□□□ 1.68
COL3A1P02461 KRT18P57-201ENST00000443599 1254 ntBASIC25.55■■□□□ 1.68
COL3A1P02461 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC25.55■■□□□ 1.68
COL3A1P02461 CYGB-204ENST00000589342 815 ntTSL 3 BASIC25.55■■□□□ 1.68
COL3A1P02461 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.55■■□□□ 1.68
COL3A1P02461 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL3A1P02461 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
COL3A1P02461 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC25.55■■□□□ 1.68
COL3A1P02461 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL3A1P02461 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC25.55■■□□□ 1.68
COL3A1P02461 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL3A1P02461 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL3A1P02461 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
COL3A1P02461 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
COL3A1P02461 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC25.54■■□□□ 1.68
COL3A1P02461 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms