Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LDLRP01130 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LDLRP01130 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 AL138781.2-201ENST00000617896 1843 ntBASIC18.61■□□□□ 0.57
LDLRP01130 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LDLRP01130 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.61■□□□□ 0.57
LDLRP01130 AC090340.1-201ENST00000620778 4980 ntBASIC18.61■□□□□ 0.57
LDLRP01130 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
LDLRP01130 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.61■□□□□ 0.57
LDLRP01130 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.61■□□□□ 0.57
LDLRP01130 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LDLRP01130 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LDLRP01130 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 BX088651.1-201ENST00000540551 451 ntBASIC18.6■□□□□ 0.57
LDLRP01130 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.6■□□□□ 0.57
LDLRP01130 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
LDLRP01130 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LDLRP01130 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.6■□□□□ 0.57
LDLRP01130 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LDLRP01130 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.6■□□□□ 0.57
LDLRP01130 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDLRP01130 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 AC009237.14-201ENST00000609975 1594 ntBASIC18.59■□□□□ 0.57
LDLRP01130 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 LETM1P2-201ENST00000597330 2178 ntBASIC18.59■□□□□ 0.57
LDLRP01130 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LDLRP01130 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.59■□□□□ 0.57
LDLRP01130 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.59■□□□□ 0.57
LDLRP01130 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.59■□□□□ 0.57
LDLRP01130 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LDLRP01130 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDLRP01130 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.59■□□□□ 0.57
LDLRP01130 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDLRP01130 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LDLRP01130 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
LDLRP01130 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LDLRP01130 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.58■□□□□ 0.57
LDLRP01130 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.58■□□□□ 0.57
LDLRP01130 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.58■□□□□ 0.57
LDLRP01130 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
LDLRP01130 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms