Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA1O95477 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA1O95477 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.16■□□□□ 0.18
ABCA1O95477 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.16■□□□□ 0.18
ABCA1O95477 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 AC004951.3-201ENST00000418645 1148 ntBASIC16.16■□□□□ 0.18
ABCA1O95477 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.16■□□□□ 0.18
ABCA1O95477 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.16■□□□□ 0.18
ABCA1O95477 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
ABCA1O95477 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
ABCA1O95477 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.16■□□□□ 0.18
ABCA1O95477 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
ABCA1O95477 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA1O95477 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.16■□□□□ 0.18
ABCA1O95477 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ABCA1O95477 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA1O95477 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA1O95477 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.15■□□□□ 0.18
ABCA1O95477 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ABCA1O95477 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ABCA1O95477 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ABCA1O95477 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ABCA1O95477 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 AC121338.2-201ENST00000622535 1744 ntBASIC16.15■□□□□ 0.18
ABCA1O95477 TFP1-202ENST00000475455 1573 ntBASIC16.15■□□□□ 0.18
ABCA1O95477 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA1O95477 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA1O95477 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.15■□□□□ 0.18
ABCA1O95477 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA1O95477 AC092647.4-201ENST00000457211 535 ntBASIC16.15■□□□□ 0.18
ABCA1O95477 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
ABCA1O95477 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA1O95477 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ABCA1O95477 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
ABCA1O95477 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
ABCA1O95477 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA1O95477 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 AC091390.4-202ENST00000476426 537 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.14■□□□□ 0.17
ABCA1O95477 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.14■□□□□ 0.17
ABCA1O95477 AC130371.2-201ENST00000619443 611 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
ABCA1O95477 LINC01521-201ENST00000504184 1943 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
ABCA1O95477 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 AL450487.1-201ENST00000426799 995 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 MFAP1P1-201ENST00000442257 1255 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 COX11P1-201ENST00000489116 835 ntBASIC16.14■□□□□ 0.17
ABCA1O95477 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.14■□□□□ 0.17
ABCA1O95477 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
ABCA1O95477 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.14■□□□□ 0.17
ABCA1O95477 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.14■□□□□ 0.17
ABCA1O95477 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ABCA1O95477 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA1O95477 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA1O95477 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA1O95477 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA1O95477 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
ABCA1O95477 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
ABCA1O95477 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
ABCA1O95477 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms