Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 CROCCP3-202ENST00000420820 1947 ntBASIC18.87■□□□□ 0.61
SIX3O95343 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX3O95343 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.87■□□□□ 0.61
SIX3O95343 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX3O95343 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.87■□□□□ 0.61
SIX3O95343 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SIX3O95343 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.87■□□□□ 0.61
SIX3O95343 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SIX3O95343 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX3O95343 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 AC006333.2-201ENST00000607957 2099 ntBASIC18.86■□□□□ 0.61
SIX3O95343 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX3O95343 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX3O95343 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.86■□□□□ 0.61
SIX3O95343 KRT18P16-201ENST00000510337 1294 ntBASIC18.86■□□□□ 0.61
SIX3O95343 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.86■□□□□ 0.61
SIX3O95343 AL121829.2-201ENST00000620908 328 ntBASIC18.86■□□□□ 0.61
SIX3O95343 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.86■□□□□ 0.61
SIX3O95343 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SIX3O95343 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX3O95343 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.85■□□□□ 0.61
SIX3O95343 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
SIX3O95343 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX3O95343 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX3O95343 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SIX3O95343 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.85■□□□□ 0.61
SIX3O95343 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
SIX3O95343 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX3O95343 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SIX3O95343 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.85■□□□□ 0.61
SIX3O95343 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
SIX3O95343 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SIX3O95343 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX3O95343 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.84■□□□□ 0.61
SIX3O95343 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.84■□□□□ 0.61
SIX3O95343 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX3O95343 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.84■□□□□ 0.61
SIX3O95343 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
SIX3O95343 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX3O95343 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.84■□□□□ 0.61
SIX3O95343 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SIX3O95343 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
SIX3O95343 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.84■□□□□ 0.61
SIX3O95343 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SIX3O95343 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SIX3O95343 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SIX3O95343 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms