Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.037e-6■■□□□ 11.8
SMNDC1O75940 MOGS-206ENST00000462189 2400 ntTSL 215.06■□□□□ 07e-6■■□□□ 11.8
SMNDC1O75940 INTS11-214ENST00000470030 2369 ntTSL 514.88□□□□□ -0.037e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.097e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.28□□□□□ -0.127e-6■■□□□ 11.8
SMNDC1O75940 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.137e-6■■□□□ 11.8
SMNDC1O75940 AP2M1-215ENST00000468048 1172 ntTSL 1 (best)14.08□□□□□ -0.167e-6■■□□□ 11.8
SMNDC1O75940 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.177e-6■■□□□ 11.8
SMNDC1O75940 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.177e-6■■□□□ 11.8
SMNDC1O75940 INTS11-240ENST00000531020 548 ntTSL 413.69□□□□□ -0.227e-6■■□□□ 11.8
SMNDC1O75940 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.247e-6■■□□□ 11.8
SMNDC1O75940 GUK1-225ENST00000481341 333 ntTSL 313.54□□□□□ -0.245e-8■■□□□ 11.8
SMNDC1O75940 DHRS3-203ENST00000482265 1036 ntTSL 313.54□□□□□ -0.247e-6■■□□□ 11.8
SMNDC1O75940 CLEC16A-204ENST00000428742 521 ntTSL 313.5□□□□□ -0.257e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.277e-6■■□□□ 11.8
SMNDC1O75940 AP2M1-209ENST00000448139 601 ntTSL 513.33□□□□□ -0.287e-6■■□□□ 11.8
SMNDC1O75940 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC13.28□□□□□ -0.283e-7■■□□□ 11.8
SMNDC1O75940 MOGS-203ENST00000414701 520 ntTSL 313.25□□□□□ -0.297e-6■■□□□ 11.8
SMNDC1O75940 AP2M1-216ENST00000472560 910 ntTSL 213.14□□□□□ -0.317e-6■■□□□ 11.8
SMNDC1O75940 GNL3-203ENST00000460073 583 ntTSL 413.13□□□□□ -0.317e-6■■□□□ 11.8
SMNDC1O75940 EPB41L5-205ENST00000452780 6410 ntTSL 5 BASIC12.8□□□□□ -0.367e-6■■□□□ 11.8
SMNDC1O75940 ELP2-202ENST00000351393 2453 ntTSL 2 BASIC12.76□□□□□ -0.373e-7■■□□□ 11.8
SMNDC1O75940 ELP2-225ENST00000544267 553 ntTSL 412.76□□□□□ -0.373e-7■■□□□ 11.8
SMNDC1O75940 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC12.74□□□□□ -0.377e-6■■□□□ 11.8
SMNDC1O75940 ELP2-201ENST00000350494 2487 ntTSL 2 BASIC12.57□□□□□ -0.43e-7■■□□□ 11.8
SMNDC1O75940 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC12.54□□□□□ -0.47e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-225ENST00000553064 1786 ntTSL 512.48□□□□□ -0.417e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-201ENST00000359282 1730 ntTSL 1 (best) BASIC12.44□□□□□ -0.427e-6■■□□□ 11.8
SMNDC1O75940 UBE2I-211ENST00000564143 444 ntTSL 312.19□□□□□ -0.467e-6■■□□□ 11.8
SMNDC1O75940 DENND4B-204ENST00000464048 551 ntTSL 211.98□□□□□ -0.497e-6■■□□□ 11.8
SMNDC1O75940 DHRS3-202ENST00000464917 539 ntTSL 311.89□□□□□ -0.517e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-210ENST00000547859 1919 ntTSL 211.88□□□□□ -0.517e-6■■□□□ 11.8
SMNDC1O75940 ZNF326-201ENST00000340281 2729 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.527e-6■■□□□ 11.8
SMNDC1O75940 USP19-204ENST00000398896 3907 ntAPPRIS ALT2 TSL 1 (best)11.81□□□□□ -0.527e-6■■□□□ 11.8
SMNDC1O75940 ELP2-228ENST00000545632 569 ntTSL 411.71□□□□□ -0.533e-7■■□□□ 11.8
SMNDC1O75940 PCBP2-203ENST00000437231 3026 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.567e-6■■□□□ 11.8
SMNDC1O75940 ELP2-204ENST00000423854 2385 ntTSL 1 (best) BASIC11.51□□□□□ -0.573e-7■■□□□ 11.8
SMNDC1O75940 RABL6-207ENST00000461992 763 ntTSL 1 (best)11.43□□□□□ -0.587e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-205ENST00000447282 3077 ntTSL 5 BASIC11.35□□□□□ -0.597e-6■■□□□ 11.8
SMNDC1O75940 ELP2-216ENST00000541190 583 ntTSL 211.25□□□□□ -0.613e-7■■□□□ 11.8
SMNDC1O75940 ELP2-210ENST00000539560 2542 ntTSL 1 (best)11.24□□□□□ -0.613e-7■■□□□ 11.8
SMNDC1O75940 ELP2-211ENST00000540135 575 ntTSL 311.1□□□□□ -0.633e-7■■□□□ 11.8
SMNDC1O75940 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.667e-6■■□□□ 11.8
SMNDC1O75940 CLEC16A-206ENST00000459723 569 ntTSL 310.78□□□□□ -0.687e-6■■□□□ 11.8
SMNDC1O75940 CLEC16A-205ENST00000436973 486 ntTSL 210.55□□□□□ -0.727e-6■■□□□ 11.8
SMNDC1O75940 ELP2-220ENST00000542430 649 ntTSL 510.55□□□□□ -0.723e-7■■□□□ 11.8
SMNDC1O75940 CLEC16A-201ENST00000261657 4351 ntTSL 410.36□□□□□ -0.757e-6■■□□□ 11.8
SMNDC1O75940 AP2M1-205ENST00000431779 602 ntTSL 310.29□□□□□ -0.767e-6■■□□□ 11.8
SMNDC1O75940 ELP2-205ENST00000442325 2722 ntTSL 2 BASIC10.29□□□□□ -0.763e-7■■□□□ 11.8
SMNDC1O75940 AP2M1-206ENST00000432591 802 ntTSL 510.08□□□□□ -0.87e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-218ENST00000550585 2543 ntTSL 510.06□□□□□ -0.87e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-226ENST00000562264 1145 ntTSL 59.86□□□□□ -0.837e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-204ENST00000439930 1296 ntAPPRIS ALT1 TSL 1 (best) BASIC9.79□□□□□ -0.847e-6■■□□□ 11.8
SMNDC1O75940 EPB41L5-210ENST00000495030 444 ntTSL 49.79□□□□□ -0.847e-6■■□□□ 11.8
SMNDC1O75940 ELP2-207ENST00000535488 692 ntTSL 29.54□□□□□ -0.883e-7■■□□□ 11.8
SMNDC1O75940 ELP2-203ENST00000358232 8459 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.893e-7■■□□□ 11.8
SMNDC1O75940 EPB41L5-204ENST00000443902 3167 ntTSL 2 BASIC9.48□□□□□ -0.897e-6■■□□□ 11.8
SMNDC1O75940 PPME1-205ENST00000539021 4055 ntTSL 29.3□□□□□ -0.927e-6■■□□□ 11.8
SMNDC1O75940 ELP2-215ENST00000540799 381 ntTSL 39.29□□□□□ -0.923e-7■■□□□ 11.8
SMNDC1O75940 PPME1-204ENST00000538501 744 ntTSL 1 (best)9.22□□□□□ -0.937e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-223ENST00000552819 1418 ntAPPRIS ALT1 TSL 2 BASIC9.17□□□□□ -0.947e-6■■□□□ 11.8
SMNDC1O75940 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.987e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-210ENST00000461674 537 ntTSL 58.84□□□□□ -0.997e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-207ENST00000546463 1457 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.037e-6■■□□□ 11.8
SMNDC1O75940 PPME1-206ENST00000541340 3618 ntTSL 1 (best)8.44□□□□□ -1.067e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-216ENST00000481048 536 ntTSL 38.35□□□□□ -1.077e-6■■□□□ 11.8
SMNDC1O75940 AP2M1-221ENST00000490151 570 ntTSL 58.24□□□□□ -1.097e-6■■□□□ 11.8
SMNDC1O75940 AC016723.1-202ENST00000436982 643 ntTSL 5 BASIC8.21□□□□□ -1.17e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-213ENST00000548933 1202 ntTSL 1 (best) BASIC8.01□□□□□ -1.137e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-222ENST00000552296 1342 ntAPPRIS ALT1 TSL 5 BASIC8.01□□□□□ -1.137e-6■■□□□ 11.8
SMNDC1O75940 EPB41L5-202ENST00000331393 1777 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.177e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-219ENST00000550733 754 ntTSL 27.71□□□□□ -1.187e-6■■□□□ 11.8
SMNDC1O75940 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.277e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-205ENST00000433298 977 ntTSL 56.77□□□□□ -1.337e-6■■□□□ 11.8
SMNDC1O75940 EPB41L5-206ENST00000461128 622 ntTSL 26.72□□□□□ -1.337e-6■■□□□ 11.8
SMNDC1O75940 PCBP2-209ENST00000547048 1696 ntTSL 26.6□□□□□ -1.357e-6■■□□□ 11.8
SMNDC1O75940 ELP2-222ENST00000543127 535 ntTSL 46.57□□□□□ -1.363e-7■■□□□ 11.8
SMNDC1O75940 MOGS-209ENST00000489655 489 ntTSL 36.34□□□□□ -1.397e-6■■□□□ 11.8
SMNDC1O75940 LRCH3-209ENST00000452660 681 ntTSL 55.2□□□□□ -1.587e-6■■□□□ 11.8
SMNDC1O75940 PHIP-202ENST00000479165 5694 ntTSL 1 (best)2.57□□□□□ -27e-6■■□□□ 11.8
SMNDC1O75940 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.71e-6■■□□□ 11.8
SMNDC1O75940 SNORD68-201ENST00000363214 84 ntBASIC3.09□□□□□ -1.911e-323■■□□□ 11.8
SMNDC1O75940 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.033e-12■■□□□ 11.8
SMNDC1O75940 STK25-215ENST00000439101 779 ntTSL 523.53■■□□□ 1.363e-12■■□□□ 11.8
SMNDC1O75940 STK25-209ENST00000424537 781 ntTSL 223.23■■□□□ 1.313e-12■■□□□ 11.8
SMNDC1O75940 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.65■■□□□ 1.223e-12■■□□□ 11.8
SMNDC1O75940 STK25-219ENST00000452891 575 ntTSL 420.43■□□□□ 0.863e-12■■□□□ 11.8
SMNDC1O75940 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.87■□□□□ 0.613e-12■■□□□ 11.8
SMNDC1O75940 STK25-214ENST00000436917 499 ntTSL 418.78■□□□□ 0.63e-12■■□□□ 11.8
SMNDC1O75940 STK25-227ENST00000483603 572 ntTSL 518.78■□□□□ 0.63e-12■■□□□ 11.8
SMNDC1O75940 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.66■□□□□ 0.583e-12■■□□□ 11.8
SMNDC1O75940 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.573e-12■■□□□ 11.8
SMNDC1O75940 STK25-213ENST00000436402 600 ntTSL 518.41■□□□□ 0.543e-12■■□□□ 11.8
SMNDC1O75940 STK25-229ENST00000492127 1153 ntTSL 218.3■□□□□ 0.523e-12■■□□□ 11.8
SMNDC1O75940 STK25-217ENST00000442307 923 ntTSL 217.95■□□□□ 0.463e-12■■□□□ 11.8
SMNDC1O75940 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.433e-12■■□□□ 11.8
SMNDC1O75940 STK25-218ENST00000450497 882 ntTSL 516.33■□□□□ 0.23e-12■■□□□ 11.8
SMNDC1O75940 STK25-211ENST00000429279 580 ntTSL 416.28■□□□□ 0.23e-12■■□□□ 11.8
SMNDC1O75940 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.06□□□□□ -0.163e-12■■□□□ 11.8
SMNDC1O75940 STK25-216ENST00000440109 935 ntTSL 313.29□□□□□ -0.283e-12■■□□□ 11.8
Retrieved 100 of 11,362 protein–RNA pairs in 197.6 ms