Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXC11O43248 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HOXC11O43248 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC11O43248 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HOXC11O43248 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HOXC11O43248 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.67■□□□□ 0.74
HOXC11O43248 LINC01238-205ENST00000567549 1107 ntBASIC19.67■□□□□ 0.74
HOXC11O43248 AC139887.4-201ENST00000607877 719 ntBASIC19.67■□□□□ 0.74
HOXC11O43248 AC141257.4-201ENST00000634557 245 ntBASIC19.67■□□□□ 0.74
HOXC11O43248 AC136944.6-201ENST00000634818 245 ntBASIC19.67■□□□□ 0.74
HOXC11O43248 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HOXC11O43248 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC11O43248 AC104417.2-201ENST00000562989 1793 ntBASIC19.67■□□□□ 0.74
HOXC11O43248 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXC11O43248 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC11O43248 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HOXC11O43248 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC11O43248 RNF152P1-201ENST00000397754 604 ntBASIC19.66■□□□□ 0.74
HOXC11O43248 COX11P1-201ENST00000489116 835 ntBASIC19.66■□□□□ 0.74
HOXC11O43248 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
HOXC11O43248 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.66■□□□□ 0.74
HOXC11O43248 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC11O43248 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC11O43248 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
HOXC11O43248 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
HOXC11O43248 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC11O43248 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.65■□□□□ 0.74
HOXC11O43248 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 FAM8A6P-201ENST00000407496 1135 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.65■□□□□ 0.74
HOXC11O43248 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.65■□□□□ 0.74
HOXC11O43248 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 YBX1P2-201ENST00000489612 999 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.65■□□□□ 0.74
HOXC11O43248 AP003041.3-201ENST00000527151 707 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC11O43248 AC087388.1-201ENST00000571370 1112 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HOXC11O43248 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 LINC01006-201ENST00000333319 2292 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXC11O43248 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC11O43248 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC11O43248 ZNF815P-204ENST00000434898 1737 ntBASIC19.65■□□□□ 0.74
HOXC11O43248 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXC11O43248 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC11O43248 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC11O43248 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC11O43248 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC11O43248 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC11O43248 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXC11O43248 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC11O43248 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC11O43248 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXC11O43248 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC11O43248 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC11O43248 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HOXC11O43248 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC11O43248 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms