Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLDN3O15551 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.11■□□□□ 0.97
CLDN3O15551 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.11■□□□□ 0.97
CLDN3O15551 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.11■□□□□ 0.97
CLDN3O15551 AL355075.4-201ENST00000554988 638 ntBASIC21.11■□□□□ 0.97
CLDN3O15551 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.11■□□□□ 0.97
CLDN3O15551 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.11■□□□□ 0.97
CLDN3O15551 MIR6786-201ENST00000616843 113 ntBASIC21.11■□□□□ 0.97
CLDN3O15551 ZNF815P-204ENST00000434898 1737 ntBASIC21.11■□□□□ 0.97
CLDN3O15551 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.11■□□□□ 0.97
CLDN3O15551 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.11■□□□□ 0.97
CLDN3O15551 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLDN3O15551 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 AIRN-201ENST00000601203 4374 ntBASIC21.1■□□□□ 0.97
CLDN3O15551 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.1■□□□□ 0.97
CLDN3O15551 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CLDN3O15551 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.1■□□□□ 0.97
CLDN3O15551 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.1■□□□□ 0.97
CLDN3O15551 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CLDN3O15551 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CLDN3O15551 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLDN3O15551 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.1■□□□□ 0.97
CLDN3O15551 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CLDN3O15551 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CLDN3O15551 AL158211.5-201ENST00000623583 2518 ntBASIC21.09■□□□□ 0.97
CLDN3O15551 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.09■□□□□ 0.97
CLDN3O15551 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.09■□□□□ 0.97
CLDN3O15551 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.09■□□□□ 0.97
CLDN3O15551 TSPY15P-201ENST00000457163 923 ntBASIC21.09■□□□□ 0.97
CLDN3O15551 B3GAT3P1-201ENST00000471720 806 ntBASIC21.09■□□□□ 0.97
CLDN3O15551 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 Z85996.1-201ENST00000494644 937 ntBASIC21.09■□□□□ 0.97
CLDN3O15551 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.09■□□□□ 0.97
CLDN3O15551 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CLDN3O15551 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CLDN3O15551 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 RCC2P6-201ENST00000526625 1557 ntBASIC21.09■□□□□ 0.97
CLDN3O15551 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CLDN3O15551 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLDN3O15551 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.09■□□□□ 0.97
CLDN3O15551 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CLDN3O15551 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 AC104417.2-201ENST00000562989 1793 ntBASIC21.08■□□□□ 0.97
CLDN3O15551 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CLDN3O15551 MESTP1-201ENST00000404287 994 ntBASIC21.08■□□□□ 0.97
CLDN3O15551 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CLDN3O15551 AC011506.1-201ENST00000474329 610 ntBASIC21.08■□□□□ 0.97
CLDN3O15551 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.08■□□□□ 0.97
CLDN3O15551 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.08■□□□□ 0.97
CLDN3O15551 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CLDN3O15551 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CLDN3O15551 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLDN3O15551 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.08■□□□□ 0.96
CLDN3O15551 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.08■□□□□ 0.96
CLDN3O15551 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLDN3O15551 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLDN3O15551 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.08■□□□□ 0.96
CLDN3O15551 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms