Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 AC093827.2-201ENST00000512654 315 ntBASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 AL049637.2-201ENST00000641778 930 ntBASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 SLC25A24-204ENST00000569674 2357 ntBASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV41A0A0B4J266 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 FAM197Y1-201ENST00000421178 764 ntBASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 AL160286.2-201ENST00000567150 934 ntBASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 CD177P1-201ENST00000606252 935 ntBASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 AC066615.1-201ENST00000640911 628 ntBASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV41A0A0B4J266 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
TRAV41A0A0B4J266 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AC113410.3-201ENST00000623366 203 ntBASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AL031985.4-201ENST00000642138 673 ntBASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV41A0A0B4J266 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV41A0A0B4J266 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms