Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 RNU1-89P-201ENST00000384592 164 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 ATF1P1-201ENST00000406040 927 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC092647.1-201ENST00000420654 287 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AL121882.1-201ENST00000422893 417 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 OR8F1P-201ENST00000425243 930 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 HIGD1AP4-201ENST00000430194 280 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AL590762.3-201ENST00000436372 640 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC083863.1-201ENST00000438811 231 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 NIPA2P2-201ENST00000496376 1083 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 MTND3P24-201ENST00000506306 329 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC090071.1-201ENST00000507713 644 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 YPEL5P3-201ENST00000547227 352 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC104229.1-201ENST00000561364 255 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC027104.1-201ENST00000563702 681 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AP001180.3-201ENST00000582221 145 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC010680.4-201ENST00000605334 543 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 FRG1HP-204ENST00000617940 757 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AL163051.2-201ENST00000618976 735 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AL445493.3-201ENST00000619568 477 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC095038.2-201ENST00000621464 1070 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC124312.6-202ENST00000623624 418 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC009452.1-201ENST00000640823 606 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS35Q96QK1 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS35Q96QK1 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 AC104446.1-201ENST00000613728 1321 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 RNA5SP27-201ENST00000363839 119 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 RNA5SP283-201ENST00000365604 119 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 RN7SKP56-201ENST00000410513 331 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 RNA5SP306-201ENST00000411087 107 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC004987.3-201ENST00000413879 771 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 RPS12P23-201ENST00000419579 400 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 ETF1P3-201ENST00000430422 1160 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 RPS26P40-201ENST00000435209 294 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 TBCAP1-201ENST00000436520 327 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC104689.1-201ENST00000473356 768 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 SNORA70.14-201ENST00000516205 110 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AP003168.1-201ENST00000530091 307 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 PTP4A1P6-201ENST00000531034 478 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC079148.1-201ENST00000565944 819 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC106734.1-201ENST00000568646 663 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC090312.2-201ENST00000582687 378 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 RMST_10.1-201ENST00000616309 154 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC099669.2-201ENST00000616549 437 ntBASIC3.94□□□□□ -1.78
VPS35Q96QK1 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
VPS35Q96QK1 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS35Q96QK1 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS35Q96QK1 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS35Q96QK1 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS35Q96QK1 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS35Q96QK1 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS35Q96QK1 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS35Q96QK1 RNA5SP515-201ENST00000364570 118 ntBASIC3.93□□□□□ -1.78
VPS35Q96QK1 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.93□□□□□ -1.78
VPS35Q96QK1 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.93□□□□□ -1.78
VPS35Q96QK1 RNU6-628P-201ENST00000410675 107 ntBASIC3.93□□□□□ -1.78
VPS35Q96QK1 RNU4-27P-201ENST00000410889 139 ntBASIC3.93□□□□□ -1.78
VPS35Q96QK1 AC092745.2-202ENST00000411880 369 ntBASIC3.93□□□□□ -1.78
VPS35Q96QK1 RPL7AP73-201ENST00000413490 353 ntBASIC3.93□□□□□ -1.78
VPS35Q96QK1 PRELID3BP11-201ENST00000414230 479 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms