Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 BX005019.1-201ENST00000561881 1810 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 OR10AB1P-202ENST00000641219 1686 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 RIOK3P1-201ENST00000418778 1528 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
FOXF1Q12946 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 RNU4-35P-201ENST00000362588 141 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 RNU4-7P-201ENST00000364758 141 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 MIR184-201ENST00000384962 84 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXF1Q12946 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 AC245052.5-201ENST00000416320 649 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 OSTCP5-201ENST00000425293 453 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 ARL4AP4-201ENST00000434170 518 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXF1Q12946 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXF1Q12946 ACTG1P13-201ENST00000486987 1043 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 AP000563.1-201ENST00000490865 758 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 FCF1P3-201ENST00000496394 590 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AP001960.1-201ENST00000506494 658 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 SNORA70.14-201ENST00000516205 110 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXF1Q12946 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AP005212.4-201ENST00000614206 710 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXF1Q12946 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXF1Q12946 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXF1Q12946 AL645937.1-201ENST00000641739 1652 ntBASIC3.14□□□□□ -1.91
FOXF1Q12946 AC110792.3-201ENST00000595906 1614 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 XIAPP3-201ENST00000312918 795 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
FOXF1Q12946 Y_RNA.62-201ENST00000362840 99 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 SNORA62.2-201ENST00000364672 152 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
FOXF1Q12946 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 SNORD17-201ENST00000390930 237 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 RN7SKP27-201ENST00000410684 333 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXF1Q12946 SEC63P1-201ENST00000425785 1258 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 RPL37P1-201ENST00000432310 284 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXF1Q12946 AL357552.1-201ENST00000445254 415 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXF1Q12946 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXF1Q12946 RPL23AP14-201ENST00000468281 468 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 AC037198.2-201ENST00000478845 733 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 HAUS1P1-201ENST00000505275 832 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.13□□□□□ -1.91
FOXF1Q12946 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.13□□□□□ -1.91
FOXF1Q12946 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXF1Q12946 PDCL2P2-201ENST00000533651 189 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.13□□□□□ -1.91
FOXF1Q12946 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXF1Q12946 MIR4429-201ENST00000580105 73 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 SNORA35B-201ENST00000607417 129 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 RNVU1-4-201ENST00000612985 164 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 AC244258.1-201ENST00000637553 1071 ntBASIC3.13□□□□□ -1.91
FOXF1Q12946 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXF1Q12946 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXF1Q12946 AC092079.1-201ENST00000558620 1985 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 RNA5SP197-201ENST00000363357 119 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXF1Q12946 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXF1Q12946 AC099336.2-201ENST00000422457 254 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC093084.1-201ENST00000424233 687 ntBASIC3.12□□□□□ -1.91
FOXF1Q12946 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms