Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL161431.1-201ENST00000618966 4205 ntBASIC2.35□□□□□ -2.03
PRKDCP78527 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
PRKDCP78527 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
PRKDCP78527 UBE3AP2-201ENST00000429033 2259 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
PRKDCP78527 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 RPSAP41-201ENST00000439695 860 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AL357552.1-201ENST00000445254 415 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AC098824.1-201ENST00000453565 980 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC2.34□□□□□ -2.03
PRKDCP78527 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
PRKDCP78527 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
PRKDCP78527 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 RAP1BP1-201ENST00000412709 553 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC2.34□□□□□ -2.03
PRKDCP78527 ARL4AP3-201ENST00000441452 574 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 RPS3P1-201ENST00000456781 192 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.34□□□□□ -2.03
PRKDCP78527 RNA5SP445-201ENST00000515889 115 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC2.34□□□□□ -2.03
PRKDCP78527 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC2.34□□□□□ -2.03
PRKDCP78527 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.34□□□□□ -2.03
PRKDCP78527 AL162713.1-201ENST00000604480 262 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AL035413.2-201ENST00000604801 525 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AL773545.4-201ENST00000637262 310 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AL513478.4-201ENST00000641636 310 ntBASIC2.34□□□□□ -2.03
PRKDCP78527 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC2.34□□□□□ -2.04
PRKDCP78527 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 BCORP1-203ENST00000513194 5093 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC2.34□□□□□ -2.04
PRKDCP78527 AC010655.1-201ENST00000449336 292 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC2.34□□□□□ -2.04
PRKDCP78527 AL034351.1-201ENST00000605288 668 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 AL356274.1-201ENST00000617064 410 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
PRKDCP78527 AC091905.1-201ENST00000624400 311 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 TCP1P3-201ENST00000414406 1498 ntBASIC2.34□□□□□ -2.04
PRKDCP78527 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
PRKDCP78527 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
PRKDCP78527 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.33□□□□□ -2.04
PRKDCP78527 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 HIGD1AP12-201ENST00000427832 281 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 HLA-N-201ENST00000437516 135 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 RN7SL585P-201ENST00000470538 280 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC110794.1-201ENST00000505816 425 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 HMGB3P13-201ENST00000511263 607 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 RNA5SP24-201ENST00000516478 95 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC010306.1-201ENST00000523223 1117 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC018552.3-201ENST00000567416 561 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 AC023389.2-201ENST00000580031 955 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
PRKDCP78527 NMD3P1-201ENST00000439704 1488 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 MRPL50P2-201ENST00000416821 482 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 AADACP1-206ENST00000561502 1193 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.33□□□□□ -2.04
PRKDCP78527 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 AC068647.1-201ENST00000489539 2265 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 FAM133CP-201ENST00000332869 704 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 OR51A3P-201ENST00000413596 924 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC2.33□□□□□ -2.04
PRKDCP78527 HCG17-214ENST00000453558 732 ntTSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 AC005229.2-201ENST00000456995 399 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC087312.1-201ENST00000471411 480 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC2.33□□□□□ -2.04
PRKDCP78527 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.33□□□□□ -2.04
PRKDCP78527 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC2.33□□□□□ -2.04
PRKDCP78527 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC2.33□□□□□ -2.04
PRKDCP78527 AC046144.1-201ENST00000478559 1853 ntBASIC2.33□□□□□ -2.04
PRKDCP78527 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
PRKDCP78527 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
PRKDCP78527 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms