Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 AC013244.3-201ENST00000605614 388 ntBASIC3.92□□□□□ -1.78
SOX3P41225 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 AC106052.1-201ENST00000608029 497 ntBASIC3.92□□□□□ -1.78
SOX3P41225 MIR8059-201ENST00000620427 81 ntBASIC3.92□□□□□ -1.78
SOX3P41225 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.92□□□□□ -1.78
SOX3P41225 MFSD8-220ENST00000641243 1422 ntBASIC3.92□□□□□ -1.78
SOX3P41225 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.92□□□□□ -1.78
SOX3P41225 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.92□□□□□ -1.78
SOX3P41225 AC097504.1-201ENST00000515103 2415 ntBASIC3.92□□□□□ -1.78
SOX3P41225 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SOX3P41225 AC107027.3-201ENST00000565095 3473 ntBASIC3.91□□□□□ -1.78
SOX3P41225 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 AC025263.3-201ENST00000622965 1396 ntBASIC3.91□□□□□ -1.78
SOX3P41225 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.91□□□□□ -1.78
SOX3P41225 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
SOX3P41225 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 RNU1-87P-201ENST00000363727 170 ntBASIC3.91□□□□□ -1.78
SOX3P41225 RNU4-51P-201ENST00000364206 140 ntBASIC3.91□□□□□ -1.78
SOX3P41225 RNU6-224P-201ENST00000384055 107 ntBASIC3.91□□□□□ -1.78
SOX3P41225 Y_RNA.578-201ENST00000390903 88 ntBASIC3.91□□□□□ -1.78
SOX3P41225 RNU2-65P-201ENST00000410162 185 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC234782.4-201ENST00000417646 1048 ntBASIC3.91□□□□□ -1.78
SOX3P41225 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 RPS12P5-201ENST00000423449 371 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 AL009174.1-201ENST00000426577 416 ntBASIC3.91□□□□□ -1.78
SOX3P41225 USP9YP24-201ENST00000434374 697 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC234064.1-201ENST00000436312 247 ntBASIC3.91□□□□□ -1.78
SOX3P41225 USP9YP17-201ENST00000444617 696 ntBASIC3.91□□□□□ -1.78
SOX3P41225 MTND1P33-201ENST00000446251 917 ntBASIC3.91□□□□□ -1.78
SOX3P41225 MRPL35P4-201ENST00000453682 566 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 PRDX3P4-201ENST00000470828 747 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC020898.1-201ENST00000474167 787 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC134050.1-201ENST00000495088 933 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC3.91□□□□□ -1.78
SOX3P41225 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 AC017037.1-201ENST00000508460 471 ntBASIC3.91□□□□□ -1.78
SOX3P41225 HMGB3P13-201ENST00000511263 607 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC008494.2-201ENST00000514544 370 ntBASIC3.91□□□□□ -1.78
SOX3P41225 MTCO1P35-201ENST00000515270 228 ntBASIC3.91□□□□□ -1.78
SOX3P41225 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 TOMM20P2-201ENST00000540082 421 ntBASIC3.91□□□□□ -1.78
SOX3P41225 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.91□□□□□ -1.78
SOX3P41225 AGGF1P5-201ENST00000567900 919 ntBASIC3.91□□□□□ -1.78
SOX3P41225 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 AC092653.1-201ENST00000608509 531 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC063944.3-201ENST00000609969 533 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AL138478.1-201ENST00000612252 832 ntBASIC3.91□□□□□ -1.78
SOX3P41225 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.91□□□□□ -1.78
SOX3P41225 AC018926.3-201ENST00000618841 406 ntBASIC3.91□□□□□ -1.78
SOX3P41225 RMST_9.1-201ENST00000619945 193 ntBASIC3.91□□□□□ -1.78
SOX3P41225 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.91□□□□□ -1.78
SOX3P41225 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC3.91□□□□□ -1.78
SOX3P41225 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 AC092162.3-201ENST00000624511 1624 ntBASIC3.91□□□□□ -1.78
SOX3P41225 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SOX3P41225 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 AC018555.1-201ENST00000567548 1980 ntBASIC3.91□□□□□ -1.78
SOX3P41225 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.91□□□□□ -1.78
SOX3P41225 AC134882.1-201ENST00000603738 1676 ntBASIC3.9□□□□□ -1.78
SOX3P41225 AC026951.1-201ENST00000559530 2459 ntBASIC3.9□□□□□ -1.78
SOX3P41225 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
SOX3P41225 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.9□□□□□ -1.78
SOX3P41225 AC138393.1-206ENST00000540997 1886 ntBASIC3.9□□□□□ -1.78
SOX3P41225 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
SOX3P41225 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
SOX3P41225 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.9□□□□□ -1.79
SOX3P41225 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
SOX3P41225 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
SOX3P41225 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
SOX3P41225 RN7SKP182-201ENST00000410772 298 ntBASIC3.9□□□□□ -1.79
SOX3P41225 RNU6-603P-201ENST00000411403 107 ntBASIC3.9□□□□□ -1.79
SOX3P41225 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.9□□□□□ -1.79
SOX3P41225 AC092647.1-201ENST00000420654 287 ntBASIC3.9□□□□□ -1.79
SOX3P41225 AC009965.2-201ENST00000425328 970 ntBASIC3.9□□□□□ -1.79
SOX3P41225 C1DP1-201ENST00000426049 402 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms