Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.16□□□□□ -1.74
BRCA1P38398 CCDC75P1-201ENST00000469247 791 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AC098583.1-201ENST00000480875 255 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 HMGB3P13-201ENST00000511263 607 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 RPL7L1P13-201ENST00000511702 739 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.16□□□□□ -1.74
BRCA1P38398 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.16□□□□□ -1.74
BRCA1P38398 HIGD1AP1-201ENST00000550979 275 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.16□□□□□ -1.74
BRCA1P38398 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.16□□□□□ -1.74
BRCA1P38398 VN1R81P-201ENST00000602085 372 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AP003392.5-201ENST00000607857 415 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AC128687.2-201ENST00000609657 566 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 AC018529.3-201ENST00000624212 2254 ntBASIC4.16□□□□□ -1.74
BRCA1P38398 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.16□□□□□ -1.74
BRCA1P38398 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.15□□□□□ -1.74
BRCA1P38398 AL353678.1-201ENST00000422735 741 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 OOSP1P1-201ENST00000423265 274 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 RPL35AP12-201ENST00000425362 338 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.15□□□□□ -1.74
BRCA1P38398 RPS29P26-201ENST00000477483 171 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC4.15□□□□□ -1.74
BRCA1P38398 RNA5SP356-201ENST00000515972 94 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 RN7SKP209-201ENST00000516888 304 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 NDUFB9P3-201ENST00000521269 501 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 AC092868.3-201ENST00000560515 784 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 AL139395.1-201ENST00000603662 160 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 SNORA35B-201ENST00000607417 129 ntBASIC4.15□□□□□ -1.74
BRCA1P38398 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.15□□□□□ -1.74
BRCA1P38398 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.15□□□□□ -1.74
BRCA1P38398 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.15□□□□□ -1.74
BRCA1P38398 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.15□□□□□ -1.74
BRCA1P38398 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.15□□□□□ -1.74
BRCA1P38398 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC4.15□□□□□ -1.74
BRCA1P38398 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.74
BRCA1P38398 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
BRCA1P38398 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
BRCA1P38398 RNU1-70P-201ENST00000362618 164 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 RNU6-1331P-201ENST00000363658 106 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 OR6K4P-201ENST00000423179 955 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.15□□□□□ -1.75
BRCA1P38398 BX119904.1-201ENST00000432026 348 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.15□□□□□ -1.75
BRCA1P38398 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
BRCA1P38398 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.15□□□□□ -1.75
BRCA1P38398 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.15□□□□□ -1.75
BRCA1P38398 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.15□□□□□ -1.75
BRCA1P38398 AC124856.1-201ENST00000600819 896 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 AC015802.5-201ENST00000607478 399 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 AC022149.2-201ENST00000621061 203 ntBASIC4.15□□□□□ -1.75
BRCA1P38398 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
BRCA1P38398 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.15□□□□□ -1.75
BRCA1P38398 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 MTND4P26-201ENST00000415971 1359 ntBASIC4.14□□□□□ -1.75
BRCA1P38398 AL138885.1-201ENST00000405921 675 ntBASIC4.14□□□□□ -1.75
BRCA1P38398 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.14□□□□□ -1.75
BRCA1P38398 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.14□□□□□ -1.75
BRCA1P38398 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.14□□□□□ -1.75
BRCA1P38398 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.14□□□□□ -1.75
BRCA1P38398 PSMA2P1-201ENST00000526365 646 ntBASIC4.14□□□□□ -1.75
BRCA1P38398 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 KPNA2P2-201ENST00000419546 1489 ntBASIC4.14□□□□□ -1.75
BRCA1P38398 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
BRCA1P38398 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
BRCA1P38398 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
BRCA1P38398 FTLP6-201ENST00000355274 422 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.13□□□□□ -1.75
BRCA1P38398 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.13□□□□□ -1.75
BRCA1P38398 UBE2V2P1-201ENST00000434717 398 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AL121890.1-201ENST00000435457 205 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.13□□□□□ -1.75
BRCA1P38398 RPL5P16-201ENST00000471467 790 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC021678.1-201ENST00000505195 936 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 RNU4-18P-201ENST00000516751 149 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC104763.2-201ENST00000604179 382 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC007998.5-201ENST00000622938 237 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC079298.2-201ENST00000623885 459 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
BRCA1P38398 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
BRCA1P38398 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
BRCA1P38398 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
BRCA1P38398 RLIMP2-201ENST00000427891 1563 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 MIR365B-201ENST00000362317 111 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 RPL5P19-201ENST00000404228 893 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC084357.1-201ENST00000473404 255 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 VN1R104P-201ENST00000505115 1009 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.13□□□□□ -1.75
BRCA1P38398 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.13□□□□□ -1.75
BRCA1P38398 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.13□□□□□ -1.75
BRCA1P38398 GTF3AP2-201ENST00000557014 266 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC122134.1-201ENST00000565664 1104 ntBASIC4.13□□□□□ -1.75
BRCA1P38398 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms