Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL773545.4-201ENST00000637262 310 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 AL513478.4-201ENST00000641636 310 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL6A3P12111 JKAMPP1-201ENST00000413804 919 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 AL691447.1-201ENST00000419456 387 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.37□□□□□ -1.87
COL6A3P12111 AC087312.1-201ENST00000471411 480 ntBASIC3.37□□□□□ -1.87
COL6A3P12111 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 AL035425.3-201ENST00000564206 4996 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 AC080128.1-201ENST00000474389 1917 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 SNORA3.2-201ENST00000408221 125 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 ARL5AP4-201ENST00000430731 512 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC018797.3-201ENST00000513388 1241 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC079600.2-201ENST00000550076 130 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.36□□□□□ -1.87
COL6A3P12111 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 AL136116.1-201ENST00000403591 381 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC098824.1-201ENST00000453565 980 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC109458.1-201ENST00000508858 316 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.36□□□□□ -1.87
COL6A3P12111 RNU6-513P-201ENST00000516104 104 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 RN7SKP82-201ENST00000516786 223 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.36□□□□□ -1.87
COL6A3P12111 AC025811.1-201ENST00000604312 472 ntBASIC3.36□□□□□ -1.87
COL6A3P12111 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A3P12111 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.36□□□□□ -1.87
COL6A3P12111 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A3P12111 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
COL6A3P12111 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
COL6A3P12111 MIR195-201ENST00000385194 87 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AL590103.1-201ENST00000434488 307 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 HIGD1AP13-201ENST00000509878 289 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 HMGB3P13-201ENST00000511263 607 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AP000926.4-201ENST00000527351 454 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AL591424.2-201ENST00000617023 128 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A3P12111 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A3P12111 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.35□□□□□ -1.87
COL6A3P12111 MIR184-201ENST00000384962 84 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 IL6-203ENST00000401651 539 ntTSL 2 BASIC3.35□□□□□ -1.87
COL6A3P12111 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.35□□□□□ -1.87
COL6A3P12111 KCTD9P3-201ENST00000434597 1169 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.35□□□□□ -1.87
COL6A3P12111 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC3.35□□□□□ -1.87
COL6A3P12111 AC008694.2-201ENST00000517591 306 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 ZNF658B-202ENST00000615961 3375 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AL355596.1-201ENST00000565399 3996 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 RN7SL499P-201ENST00000481141 276 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AC025554.1-201ENST00000505641 188 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.35□□□□□ -1.87
COL6A3P12111 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A3P12111 MIR3936-201ENST00000584304 110 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AC078899.3-201ENST00000599065 212 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 AC010680.4-201ENST00000605334 543 ntBASIC3.35□□□□□ -1.87
COL6A3P12111 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.35□□□□□ -1.87
COL6A3P12111 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
COL6A3P12111 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC3.34□□□□□ -1.87
COL6A3P12111 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A3P12111 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC3.34□□□□□ -1.87
COL6A3P12111 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A3P12111 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
COL6A3P12111 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A3P12111 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A3P12111 SNORD109B-201ENST00000458961 67 ntBASIC3.34□□□□□ -1.87
COL6A3P12111 SNORD109A-201ENST00000459128 67 ntBASIC3.34□□□□□ -1.87
COL6A3P12111 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.34□□□□□ -1.87
COL6A3P12111 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC3.34□□□□□ -1.87
COL6A3P12111 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.34□□□□□ -1.87
COL6A3P12111 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.34□□□□□ -1.87
COL6A3P12111 AC015871.5-202ENST00000623252 701 ntBASIC3.34□□□□□ -1.87
COL6A3P12111 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A3P12111 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A3P12111 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A3P12111 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A3P12111 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A3P12111 RN7SKP56-201ENST00000410513 331 ntBASIC3.34□□□□□ -1.88
COL6A3P12111 AC009414.1-201ENST00000427200 443 ntBASIC3.34□□□□□ -1.88
COL6A3P12111 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC3.34□□□□□ -1.88
COL6A3P12111 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.34□□□□□ -1.88
COL6A3P12111 AC008565.1-201ENST00000509046 885 ntBASIC3.34□□□□□ -1.88
COL6A3P12111 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.34□□□□□ -1.88
COL6A3P12111 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms