Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC084824.1-201ENST00000550917 1005 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC2.93□□□□□ -1.94
SDCBPO00560 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC2.93□□□□□ -1.94
SDCBPO00560 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC2.93□□□□□ -1.94
SDCBPO00560 PSMA6P4-201ENST00000603247 718 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC034236.3-201ENST00000605999 461 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC009318.3-201ENST00000616916 503 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC092628.2-201ENST00000622492 339 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC110801.1-201ENST00000623590 212 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SDCBPO00560 AC119674.1-207ENST00000641355 633 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.93□□□□□ -1.94
SDCBPO00560 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SDCBPO00560 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SDCBPO00560 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.93□□□□□ -1.94
SDCBPO00560 AC007496.3-201ENST00000624987 3443 ntBASIC2.93□□□□□ -1.94
SDCBPO00560 AC004972.1-201ENST00000623934 2209 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 NMD3P1-201ENST00000439704 1488 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 FRG1CP-201ENST00000358464 769 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 RN7SKP280-201ENST00000364196 304 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 MIR92A2-201ENST00000385299 75 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC093578.1-201ENST00000415219 368 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 AP000907.1-201ENST00000428428 510 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 HMGB3P8-201ENST00000449709 577 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.92□□□□□ -1.94
SDCBPO00560 RNU6-1218P-201ENST00000458990 108 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 RPL23AP12-201ENST00000467573 473 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC2.92□□□□□ -1.94
SDCBPO00560 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 RN7SKP18-201ENST00000516005 275 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC107934.2-201ENST00000518653 310 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.92□□□□□ -1.94
SDCBPO00560 SMARCE1P4-201ENST00000523647 241 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC2.92□□□□□ -1.94
SDCBPO00560 MIR5047-201ENST00000579212 100 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 MIR4716-201ENST00000579628 84 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 SS18L2P2-201ENST00000583960 235 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.92□□□□□ -1.94
SDCBPO00560 AC010591.1-201ENST00000603941 649 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AL592494.3-201ENST00000609485 464 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.92□□□□□ -1.94
SDCBPO00560 U4.6-201ENST00000621618 127 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC112200.1-201ENST00000625015 234 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 AC009452.1-201ENST00000640823 606 ntBASIC2.92□□□□□ -1.94
SDCBPO00560 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC2.92□□□□□ -1.94
SDCBPO00560 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.92□□□□□ -1.94
SDCBPO00560 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
SDCBPO00560 AC007823.1-201ENST00000569932 1566 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 PTER-201ENST00000298942 3448 ntTSL 5 BASIC2.91□□□□□ -1.94
SDCBPO00560 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
SDCBPO00560 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
SDCBPO00560 SNORD9-201ENST00000362566 104 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 RNU6-304P-201ENST00000364855 107 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 RNA5SP479-201ENST00000364858 117 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 SNORD6-201ENST00000365444 73 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AL359837.1-201ENST00000381357 287 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 RNA5SP31-201ENST00000411144 127 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 ATP5A1P2-201ENST00000412323 255 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AL356968.1-201ENST00000416622 474 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 RPL23AP82-202ENST00000427528 469 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 CACYBPP1-201ENST00000438592 684 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 NOTCH2P1-201ENST00000443481 624 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 SUN3-208ENST00000453192 801 ntTSL 5 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC007967.1-201ENST00000455422 1159 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC2.91□□□□□ -1.94
SDCBPO00560 CENPBD1P1-201ENST00000464061 469 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 SEPT7P6-201ENST00000469999 1143 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 TRBV8-2-201ENST00000475637 270 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 MTND6P6-201ENST00000478031 263 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AC021146.5-201ENST00000503544 545 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AC010627.1-201ENST00000503819 1294 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SDCBPO00560 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.91□□□□□ -1.94
SDCBPO00560 MED28P5-201ENST00000528254 438 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
SDCBPO00560 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC004024.1-201ENST00000549244 247 ntBASIC2.91□□□□□ -1.94
SDCBPO00560 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.91□□□□□ -1.94
SDCBPO00560 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC2.91□□□□□ -1.94
SDCBPO00560 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms