Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR6758-201ENST00000620653 63 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 AC000367.1-201ENST00000452711 1766 ntBASIC4.55□□□□□ -1.68
VPS28Q9UK41 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS28Q9UK41 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS28Q9UK41 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 OR5P1P-201ENST00000299512 925 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC126755.2-208ENST00000327792 462 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC138969.1-213ENST00000331436 462 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 RPL32P3-201ENST00000359025 275 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 RNU6-921P-201ENST00000384361 107 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 RPS24P12-201ENST00000402084 394 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 RNU4-25P-201ENST00000410569 230 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 RPL31P2-201ENST00000413849 377 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 P2RY10P2-201ENST00000416730 913 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 COX6CP17-201ENST00000421389 185 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL592293.2-201ENST00000422292 996 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL358794.1-201ENST00000445689 381 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 SNORD108-201ENST00000459332 71 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC069528.1-202ENST00000482888 637 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC012170.1-201ENST00000495139 359 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC104057.1-201ENST00000515547 497 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC138701.1-201ENST00000524329 714 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 OR8G5-201ENST00000524943 1041 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 MIR5708-201ENST00000579723 85 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC090181.2-201ENST00000602975 672 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC104763.3-201ENST00000613765 618 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AC006065.5-201ENST00000623427 349 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 AL512506.2-201ENST00000624472 458 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 ZNF663P-202ENST00000641770 1131 ntBASIC4.54□□□□□ -1.68
VPS28Q9UK41 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS28Q9UK41 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS28Q9UK41 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC008033.1-201ENST00000216407 1162 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 SNORA62-201ENST00000365493 153 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 RPS20P14-201ENST00000412545 360 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 MTND4P22-201ENST00000413116 1169 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC062016.2-201ENST00000420950 676 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 OSTCP5-201ENST00000425293 453 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 SKP1P3-201ENST00000429280 487 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 RPS29P17-201ENST00000430795 166 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 CBX1P1-201ENST00000440184 427 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 MTCO1P53-201ENST00000441633 699 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 TPT1P12-201ENST00000448968 492 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 DHFRP3-201ENST00000455595 559 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 RN7SL98P-201ENST00000462271 300 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC010469.1-201ENST00000463864 576 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms