Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-876P-201ENST00000391295 104 ntBASIC5.03□□□□□ -1.6
MSX2P35548 MTCO3P40-201ENST00000392516 676 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX2P35548 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX2P35548 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX2P35548 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC5.03□□□□□ -1.6
MSX2P35548 AC127526.2-201ENST00000426436 775 ntBASIC5.03□□□□□ -1.6
MSX2P35548 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX2P35548 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX2P35548 RPL7P11-201ENST00000437586 658 ntBASIC5.03□□□□□ -1.6
MSX2P35548 CBX1P4-201ENST00000439415 457 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX2P35548 CYCSP24-201ENST00000445119 316 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RPL7P59-201ENST00000447700 943 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC009963.3-201ENST00000458090 486 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC074386.1-201ENST00000476560 767 ntBASIC5.03□□□□□ -1.6
MSX2P35548 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX2P35548 RPS27P23-201ENST00000487608 251 ntBASIC5.03□□□□□ -1.6
MSX2P35548 MTCO1P30-201ENST00000515244 580 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RNU6-513P-201ENST00000516104 104 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.03□□□□□ -1.6
MSX2P35548 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 MIR5697-201ENST00000578045 78 ntBASIC5.03□□□□□ -1.6
MSX2P35548 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX2P35548 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 AC005034.5-201ENST00000604219 466 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AL049634.3-201ENST00000604968 457 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC008536.2-201ENST00000607284 349 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC128687.2-201ENST00000609657 566 ntBASIC5.03□□□□□ -1.6
MSX2P35548 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 RN7SL544P-201ENST00000617232 284 ntBASIC5.03□□□□□ -1.6
MSX2P35548 MIR6729-201ENST00000618194 65 ntBASIC5.03□□□□□ -1.6
MSX2P35548 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 AC024884.1-201ENST00000620583 399 ntBASIC5.03□□□□□ -1.6
MSX2P35548 RN7SL763P-201ENST00000620922 284 ntBASIC5.03□□□□□ -1.6
MSX2P35548 MTND1P37-201ENST00000636562 264 ntBASIC5.03□□□□□ -1.6
MSX2P35548 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
MSX2P35548 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
MSX2P35548 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
MSX2P35548 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX2P35548 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.61
MSX2P35548 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 AC131971.1-201ENST00000332881 1482 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC104966.1-201ENST00000467010 1464 ntBASIC5.02□□□□□ -1.61
MSX2P35548 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX2P35548 COX6B1P3-201ENST00000312310 260 ntBASIC5.02□□□□□ -1.61
MSX2P35548 RNU6-492P-201ENST00000363035 104 ntBASIC5.02□□□□□ -1.61
MSX2P35548 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX2P35548 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
MSX2P35548 RNU6-780P-201ENST00000391030 104 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC005522.1-201ENST00000395416 346 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC025750.1-201ENST00000399891 379 ntBASIC5.02□□□□□ -1.61
MSX2P35548 RPS24P12-201ENST00000402084 394 ntBASIC5.02□□□□□ -1.61
MSX2P35548 MIR1203-201ENST00000408812 85 ntBASIC5.02□□□□□ -1.61
MSX2P35548 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.02□□□□□ -1.61
MSX2P35548 Y_RNA.598-201ENST00000410480 95 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 HMGB1P11-201ENST00000413899 637 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL596448.1-201ENST00000415024 392 ntBASIC5.02□□□□□ -1.61
MSX2P35548 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AC069157.1-201ENST00000421749 137 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL953862.1-201ENST00000423016 168 ntBASIC5.02□□□□□ -1.61
MSX2P35548 OR2AH1P-201ENST00000425717 928 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AC073464.1-201ENST00000429823 534 ntBASIC5.02□□□□□ -1.61
MSX2P35548 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AC073614.1-201ENST00000438690 650 ntBASIC5.02□□□□□ -1.61
MSX2P35548 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AMYP1-201ENST00000440059 1023 ntBASIC5.02□□□□□ -1.61
MSX2P35548 RPS4XP4-201ENST00000443195 763 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AL118496.2-201ENST00000448300 230 ntBASIC5.02□□□□□ -1.61
MSX2P35548 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 FDX1P2-201ENST00000450769 375 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL354710.1-201ENST00000453641 246 ntBASIC5.02□□□□□ -1.61
MSX2P35548 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 snoU109.1-201ENST00000459339 135 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC091564.1-201ENST00000464563 479 ntBASIC5.02□□□□□ -1.61
MSX2P35548 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 AC015724.1-201ENST00000478577 156 ntBASIC5.02□□□□□ -1.61
MSX2P35548 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 NENFP3-201ENST00000503735 313 ntBASIC5.02□□□□□ -1.61
MSX2P35548 RNU6-358P-201ENST00000516564 75 ntBASIC5.02□□□□□ -1.61
MSX2P35548 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms