Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.75□□□□□ -1.49
HMGB1P09429 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.75□□□□□ -1.49
HMGB1P09429 AC087763.1-201ENST00000603391 286 ntBASIC5.75□□□□□ -1.49
HMGB1P09429 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HMGB1P09429 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.75□□□□□ -1.49
HMGB1P09429 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.74□□□□□ -1.49
HMGB1P09429 AL731566.1-201ENST00000620490 1937 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
HMGB1P09429 AP000542.2-201ENST00000623199 6179 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
HMGB1P09429 AL133383.2-201ENST00000622958 2336 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HMGB1P09429 RN7SKP95-201ENST00000362860 303 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HMGB1P09429 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HMGB1P09429 AP000580.1-201ENST00000404439 358 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AL136310.1-201ENST00000404926 654 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.74□□□□□ -1.49
HMGB1P09429 RGS17P1-201ENST00000423358 553 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.74□□□□□ -1.49
HMGB1P09429 MTCO2P23-201ENST00000425216 680 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.74□□□□□ -1.49
HMGB1P09429 AL662791.1-201ENST00000441992 928 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.74□□□□□ -1.49
HMGB1P09429 AL031584.1-201ENST00000447169 754 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AL589880.1-201ENST00000448271 287 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 PTGES3P5-201ENST00000455109 434 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC005410.1-202ENST00000460347 485 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC011979.1-201ENST00000472300 483 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 HMGB1P28-201ENST00000507778 552 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC109458.1-201ENST00000508858 316 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC010625.1-201ENST00000511296 403 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC008837.2-201ENST00000513076 418 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AP000619.3-201ENST00000535634 1127 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC005832.3-201ENST00000537929 631 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AL049839.1-201ENST00000556151 657 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC008782.1-201ENST00000603386 430 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 RPL23AP92-201ENST00000603609 255 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 AC069209.1-201ENST00000619282 651 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 MIR1322-201ENST00000638013 71 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HMGB1P09429 KPNA2P2-201ENST00000419546 1489 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.74□□□□□ -1.49
HMGB1P09429 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.74□□□□□ -1.49
HMGB1P09429 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HMGB1P09429 RARSP1-201ENST00000542842 1418 ntBASIC5.74□□□□□ -1.49
HMGB1P09429 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HMGB1P09429 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HMGB1P09429 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.73□□□□□ -1.49
HMGB1P09429 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HMGB1P09429 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 RNU6-1122P-201ENST00000384449 107 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 RNU4-22P-201ENST00000411058 166 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 AC114755.2-201ENST00000413520 361 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 MTATP6P20-201ENST00000414147 562 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 CHEK2P3-201ENST00000416118 248 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.73□□□□□ -1.49
HMGB1P09429 RPS17P8-201ENST00000434525 335 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 RPL23AP74-201ENST00000437246 471 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 PRPF38AP2-201ENST00000438179 851 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.73□□□□□ -1.49
HMGB1P09429 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.73□□□□□ -1.49
HMGB1P09429 AC007327.1-201ENST00000447461 264 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 SLC31A1P1-201ENST00000451221 567 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 snoU13.4-201ENST00000458916 104 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 HMGB1P25-201ENST00000468402 607 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 SNRPGP3-201ENST00000469405 227 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 RPS15AP17-201ENST00000470598 390 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 RN7SL177P-201ENST00000476596 299 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 GAPDHP56-201ENST00000506031 988 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 SLC2A13P1-201ENST00000531560 322 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.73□□□□□ -1.49
HMGB1P09429 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.73□□□□□ -1.49
HMGB1P09429 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.73□□□□□ -1.49
HMGB1P09429 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.73□□□□□ -1.49
HMGB1P09429 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.73□□□□□ -1.49
HMGB1P09429 AC011487.3-201ENST00000593607 453 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 AC012669.1-201ENST00000603209 283 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 AC007497.1-201ENST00000610421 561 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 MIR8069-1-201ENST00000616627 86 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 MIR8069-2-201ENST00000621412 86 ntBASIC5.73□□□□□ -1.49
HMGB1P09429 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HMGB1P09429 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.73□□□□□ -1.49
HMGB1P09429 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HMGB1P09429 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.73□□□□□ -1.49
HMGB1P09429 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HMGB1P09429 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.73□□□□□ -1.49
HMGB1P09429 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HMGB1P09429 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 137 ms