Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SNORA40.4-201ENST00000390971 128 ntBASIC3.98□□□□□ -1.77
SDC3O75056 RNU4-27P-201ENST00000410889 139 ntBASIC3.98□□□□□ -1.77
SDC3O75056 RNA5SP39-201ENST00000411245 120 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC3O75056 RBMY1KP-201ENST00000423480 476 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC3O75056 RPS7P5-201ENST00000441482 581 ntBASIC3.98□□□□□ -1.77
SDC3O75056 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC3O75056 AL133547.1-201ENST00000448546 220 ntBASIC3.98□□□□□ -1.77
SDC3O75056 RPS11P1-201ENST00000451072 473 ntBASIC3.98□□□□□ -1.77
SDC3O75056 snoU13.22-201ENST00000459428 104 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AC091564.1-201ENST00000464563 479 ntBASIC3.98□□□□□ -1.77
SDC3O75056 S100A11P1-201ENST00000477525 312 ntBASIC3.98□□□□□ -1.77
SDC3O75056 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 RN7SKP283-201ENST00000517197 270 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AC090151.1-201ENST00000520784 730 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AC008562.1-201ENST00000521763 330 ntBASIC3.98□□□□□ -1.77
SDC3O75056 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC3O75056 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC3O75056 PHBP17-201ENST00000528576 541 ntBASIC3.98□□□□□ -1.77
SDC3O75056 OR4R2P-201ENST00000530815 597 ntBASIC3.98□□□□□ -1.77
SDC3O75056 PTP4A1P6-201ENST00000531034 478 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC3O75056 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC3O75056 RPL23AP87-202ENST00000573039 466 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.98□□□□□ -1.77
SDC3O75056 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 AL121772.2-201ENST00000614331 297 ntBASIC3.98□□□□□ -1.77
SDC3O75056 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 MIR4727-201ENST00000622232 55 ntBASIC3.98□□□□□ -1.77
SDC3O75056 AC004777.1-201ENST00000624317 287 ntBASIC3.98□□□□□ -1.77
SDC3O75056 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 AC012442.3-202ENST00000636742 206 ntBASIC3.98□□□□□ -1.77
SDC3O75056 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.98□□□□□ -1.77
SDC3O75056 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 AC017007.4-201ENST00000503353 1352 ntBASIC3.98□□□□□ -1.77
SDC3O75056 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SDC3O75056 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.98□□□□□ -1.77
SDC3O75056 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SDC3O75056 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.97□□□□□ -1.77
SDC3O75056 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
SDC3O75056 SNORA60-201ENST00000362396 134 ntBASIC3.97□□□□□ -1.77
SDC3O75056 U3.15-201ENST00000365398 212 ntBASIC3.97□□□□□ -1.77
SDC3O75056 SNORA70.4-201ENST00000365509 134 ntBASIC3.97□□□□□ -1.77
SDC3O75056 MIR513A2-201ENST00000385249 127 ntBASIC3.97□□□□□ -1.77
SDC3O75056 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
SDC3O75056 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC3O75056 ATP5F1P6-201ENST00000402768 767 ntBASIC3.97□□□□□ -1.77
SDC3O75056 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 HMGB3P18-201ENST00000406327 590 ntBASIC3.97□□□□□ -1.77
SDC3O75056 RNU2-65P-201ENST00000410162 185 ntBASIC3.97□□□□□ -1.77
SDC3O75056 RNU2-6P-201ENST00000411404 190 ntBASIC3.97□□□□□ -1.77
SDC3O75056 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC3O75056 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC3O75056 AL512661.1-201ENST00000434586 1253 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 OR9M1P-201ENST00000459641 921 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AL139099.1-201ENST00000497398 403 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC3O75056 AC006499.6-201ENST00000511169 607 ntBASIC3.97□□□□□ -1.77
SDC3O75056 HNRNPKP5-201ENST00000515300 253 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AC008694.2-201ENST00000517591 306 ntBASIC3.97□□□□□ -1.77
SDC3O75056 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.97□□□□□ -1.77
SDC3O75056 IGLVIV-53-201ENST00000520107 367 ntBASIC3.97□□□□□ -1.77
SDC3O75056 UBTFL9-201ENST00000534504 1148 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.97□□□□□ -1.77
SDC3O75056 AC008759.1-201ENST00000589783 983 ntBASIC3.97□□□□□ -1.77
SDC3O75056 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 AL392112.1-201ENST00000605115 829 ntBASIC3.97□□□□□ -1.77
SDC3O75056 AC010680.4-201ENST00000605334 543 ntBASIC3.97□□□□□ -1.77
SDC3O75056 MIR6075-201ENST00000620782 95 ntBASIC3.97□□□□□ -1.77
SDC3O75056 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 AC244100.1-202ENST00000621554 382 ntBASIC3.97□□□□□ -1.77
SDC3O75056 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
SDC3O75056 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.97□□□□□ -1.77
SDC3O75056 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SDC3O75056 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SDC3O75056 DCAF13P3-201ENST00000561147 1334 ntBASIC3.96□□□□□ -1.77
SDC3O75056 MFSD8-213ENST00000641134 1327 ntBASIC3.96□□□□□ -1.77
SDC3O75056 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
SDC3O75056 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.96□□□□□ -1.77
SDC3O75056 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.96□□□□□ -1.78
SDC3O75056 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SDC3O75056 RNA5SP387-201ENST00000364226 106 ntBASIC3.96□□□□□ -1.78
SDC3O75056 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.96□□□□□ -1.78
SDC3O75056 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.96□□□□□ -1.78
SDC3O75056 RNU6-1005P-201ENST00000384519 107 ntBASIC3.96□□□□□ -1.78
SDC3O75056 MIR30B-201ENST00000384850 88 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms