Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SCARNA20.4-201ENST00000516969 131 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 RAB9BP1-201ENST00000519581 626 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 DEFB108A-201ENST00000530110 222 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC092747.2-201ENST00000545069 983 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.25□□□□□ -1.57
USP39Q53GS9 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 MIR4697-201ENST00000582977 78 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AP001542.2-201ENST00000593141 364 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.25□□□□□ -1.57
USP39Q53GS9 AP000769.2-201ENST00000602344 396 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC009027.1-201ENST00000604510 479 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC099676.1-201ENST00000608886 657 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC023158.2-201ENST00000614876 543 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC087385.3-201ENST00000620477 187 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AP005264.7-201ENST00000625003 745 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.25□□□□□ -1.57
USP39Q53GS9 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
USP39Q53GS9 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 ZNF680P1-201ENST00000436625 1469 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 AC107027.3-201ENST00000565095 3473 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP39Q53GS9 AC092326.2-201ENST00000624772 1561 ntBASIC5.25□□□□□ -1.57
USP39Q53GS9 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.25□□□□□ -1.57
USP39Q53GS9 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC015813.6-201ENST00000624409 5808 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 RN7SKP226-201ENST00000364912 300 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 RNA5SP187-201ENST00000384400 119 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 RNA5SP241-201ENST00000391326 114 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 Z97832.1-201ENST00000402490 328 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 ARL4AP5-201ENST00000404372 599 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AL590002.1-201ENST00000406554 418 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 MIR1182-201ENST00000408363 97 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 RPS15AP38-201ENST00000413110 372 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC019050.1-201ENST00000418508 492 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 HSPD1P12-201ENST00000429127 1069 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 RPL7AP49-201ENST00000429522 581 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AL591438.1-201ENST00000433508 581 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC092170.1-201ENST00000440211 356 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AL035407.2-201ENST00000454090 378 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC023424.2-201ENST00000493479 777 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 IGBP1P4-201ENST00000503202 879 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 MTCO2P30-201ENST00000503662 364 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC025465.4-201ENST00000513422 638 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 MIR4270-201ENST00000581799 70 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC090616.5-202ENST00000582111 297 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC005730.3-201ENST00000583067 366 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC234771.5-201ENST00000600161 514 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC133552.5-201ENST00000604266 540 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC009220.3-201ENST00000604318 586 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AL022154.1-201ENST00000604698 785 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC023813.4-201ENST00000607580 580 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 MIR378J-201ENST00000611988 109 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
USP39Q53GS9 MIR7641-1-201ENST00000627518 61 ntBASIC5.24□□□□□ -1.57
USP39Q53GS9 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
USP39Q53GS9 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP39Q53GS9 AC026951.1-201ENST00000559530 2459 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms