Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC124283.4-201ENST00000581815 456 ntBASIC3.99□□□□□ -1.77
LHX3Q9UBR4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC022916.3-201ENST00000592961 742 ntBASIC3.99□□□□□ -1.77
LHX3Q9UBR4 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AP000255.1-201ENST00000610276 676 ntBASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC243756.2-201ENST00000618406 463 ntBASIC3.99□□□□□ -1.77
LHX3Q9UBR4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LHX3Q9UBR4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 SAGE2P-201ENST00000420011 2126 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 ZNF962P-201ENST00000443465 3140 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 Y_RNA.126-201ENST00000363382 111 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 RNU6-1339P-201ENST00000363574 91 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 BX664727.1-201ENST00000416024 466 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 MTCO2P1-201ENST00000424648 477 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 ELOCP18-201ENST00000434209 337 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 HMGB1P37-201ENST00000439613 609 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 RPS29P7-201ENST00000439662 171 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 RANP8-201ENST00000444720 713 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC008379.1-201ENST00000463655 464 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 RNU6-334P-201ENST00000517072 102 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 EIF1P6-201ENST00000600054 334 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AP006248.2-201ENST00000623309 592 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AP003400.6-201ENST00000624698 740 ntBASIC3.98□□□□□ -1.77
LHX3Q9UBR4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LHX3Q9UBR4 AC027290.2-201ENST00000623210 18662 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC087190.4-201ENST00000574616 8334 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 RHOT1P2-201ENST00000366423 333 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AP002784.2-201ENST00000397300 549 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 RNA5SP306-201ENST00000411087 107 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 CYCSP10-201ENST00000417973 294 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC011742.1-201ENST00000431448 434 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC023347.2-201ENST00000433994 462 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC105402.2-201ENST00000438503 358 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC092170.1-201ENST00000440211 356 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 TPTE2P3-201ENST00000441562 1189 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 OR9M1P-201ENST00000459641 921 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 MTATP6P22-201ENST00000507369 598 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 RNA5SP154-201ENST00000516193 111 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC139103.1-201ENST00000534696 1030 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 CR383656.14-201ENST00000551951 406 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC106785.1-201ENST00000565935 262 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC095057.3-201ENST00000567102 1157 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC015726.1-201ENST00000602353 681 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.97□□□□□ -1.77
LHX3Q9UBR4 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.97□□□□□ -1.77
LHX3Q9UBR4 AC017104.5-201ENST00000637647 639 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms