Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AF279873.1-201ENST00000523393 313 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 OR4C2P-201ENST00000530855 1064 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AP001317.1-201ENST00000531194 960 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC090695.1-201ENST00000561269 1222 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AGGF1P6-201ENST00000569213 976 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC015688.2-201ENST00000584523 262 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 NF1P5-201ENST00000588287 448 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AF131215.7-201ENST00000602443 707 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AL392112.1-201ENST00000605115 829 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC007497.1-201ENST00000610421 561 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 SNX18P1Y-201ENST00000616231 511 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 AC109809.1-201ENST00000619665 545 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 LINC01109-201ENST00000603837 3081 ntBASIC4.51□□□□□ -1.69
COL28A1Q2UY09 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.51□□□□□ -1.69
COL28A1Q2UY09 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SPRR2C-201ENST00000290702 219 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SNORA71.3-201ENST00000362582 128 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SNORA68.2-201ENST00000391263 128 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 PTMAP2-201ENST00000397627 327 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 ERHP2-201ENST00000402323 299 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 PDSS1P1-201ENST00000422953 1114 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 HMGB1P16-201ENST00000447155 540 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 MTND4LP2-201ENST00000502312 285 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC114322.1-201ENST00000506771 926 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC021146.3-201ENST00000511911 260 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC113368.1-201ENST00000603736 382 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AL591034.3-201ENST00000605511 685 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC090948.1-201ENST00000607464 549 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC024257.5-201ENST00000612739 531 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AP000676.4-201ENST00000624659 623 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AC090971.4-201ENST00000560291 1800 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 MTND4P10-201ENST00000446199 1363 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 AP005901.5-201ENST00000545779 1796 ntBASIC4.5□□□□□ -1.69
COL28A1Q2UY09 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
COL28A1Q2UY09 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL450326.2-201ENST00000421913 1962 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNU6-839P-201ENST00000363347 108 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNU6-413P-201ENST00000384115 107 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNU6-146P-201ENST00000384602 108 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 MIR217-201ENST00000384817 110 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 GSTA8P-201ENST00000404253 637 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNA5SP317-201ENST00000410176 116 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNA5SP146-201ENST00000410743 123 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RNA5SP311-201ENST00000411290 116 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 RPS24P7-201ENST00000416921 246 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 KRR1P1-201ENST00000419430 803 ntBASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.49□□□□□ -1.69
COL28A1Q2UY09 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms