Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX1P28360 RNU6-406P-201ENST00000516470 107 ntBASIC6.12□□□□□ -1.43
MSX1P28360 IGLVIV-64-201ENST00000518581 301 ntBASIC6.12□□□□□ -1.43
MSX1P28360 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX1P28360 TRIM51GP-201ENST00000534741 1350 ntBASIC6.12□□□□□ -1.43
MSX1P28360 SETP2-201ENST00000553886 926 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX1P28360 MT1CP-201ENST00000567054 174 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AP005119.1-201ENST00000580956 292 ntBASIC6.12□□□□□ -1.43
MSX1P28360 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 AC091133.5-201ENST00000603088 301 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC104695.3-201ENST00000604052 296 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AL683813.2-201ENST00000605245 502 ntBASIC6.12□□□□□ -1.43
MSX1P28360 HSPE1P14-201ENST00000605812 302 ntBASIC6.12□□□□□ -1.43
MSX1P28360 U1.31-201ENST00000620022 160 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 AC138627.2-201ENST00000624202 601 ntBASIC6.12□□□□□ -1.43
MSX1P28360 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 SAMMSON-210ENST00000641260 1308 ntBASIC6.12□□□□□ -1.43
MSX1P28360 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC244517.1-201ENST00000606030 2086 ntBASIC6.11□□□□□ -1.43
MSX1P28360 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
MSX1P28360 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 AC011416.1-201ENST00000514947 1732 ntBASIC6.11□□□□□ -1.43
MSX1P28360 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 KPNA2P1-201ENST00000458289 1591 ntBASIC6.11□□□□□ -1.43
MSX1P28360 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 RNA5SP308-201ENST00000362532 115 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RNA5SP321-201ENST00000362722 111 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RNU6-82P-201ENST00000363970 107 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RNU6-593P-201ENST00000364716 112 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RNU6-1207P-201ENST00000384343 107 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RNU6-441P-201ENST00000384545 106 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AL049697.2-201ENST00000403708 294 ntBASIC6.11□□□□□ -1.43
MSX1P28360 PRRC2CP1-201ENST00000404428 159 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC108734.1-201ENST00000439549 399 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 EEF1B2P3-201ENST00000447718 678 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC6.11□□□□□ -1.43
MSX1P28360 AC118758.1-202ENST00000454719 225 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC092451.1-201ENST00000480211 153 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RN7SL561P-201ENST00000488553 281 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 RNU6-1143P-201ENST00000516125 104 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RN7SKP196-201ENST00000516267 345 ntBASIC6.11□□□□□ -1.43
MSX1P28360 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
MSX1P28360 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.11□□□□□ -1.43
MSX1P28360 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 AC007068.2-201ENST00000543168 395 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC027667.1-201ENST00000545814 304 ntBASIC6.11□□□□□ -1.43
MSX1P28360 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 LSM6P2-201ENST00000552208 177 ntBASIC6.11□□□□□ -1.43
MSX1P28360 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.11□□□□□ -1.43
MSX1P28360 AC060771.1-201ENST00000582031 164 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC6.11□□□□□ -1.43
MSX1P28360 AC013244.1-201ENST00000604279 193 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AL008729.2-201ENST00000606393 473 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC6.11□□□□□ -1.43
MSX1P28360 AC103710.2-201ENST00000609912 942 ntBASIC6.11□□□□□ -1.43
MSX1P28360 AC011890.2-201ENST00000613393 294 ntBASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms