Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC021242.1-201ENST00000507315 2035 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.29□□□□□ -1.56
COL3A1P02461 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.29□□□□□ -1.56
COL3A1P02461 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC5.29□□□□□ -1.56
COL3A1P02461 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC5.29□□□□□ -1.56
COL3A1P02461 GTF2IP22-201ENST00000554443 182 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 AC026741.1-201ENST00000605892 482 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC5.29□□□□□ -1.56
COL3A1P02461 AP001596.2-201ENST00000608410 312 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 AC021851.1-201ENST00000608537 1082 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 AC067931.1-201ENST00000624190 671 ntBASIC5.29□□□□□ -1.56
COL3A1P02461 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC5.29□□□□□ -1.56
COL3A1P02461 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.29□□□□□ -1.56
COL3A1P02461 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL3A1P02461 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.29□□□□□ -1.56
COL3A1P02461 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 ELL2P3-201ENST00000457883 1602 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 CASC19-255ENST00000641733 1385 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 RAD1P1-201ENST00000231383 813 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.28□□□□□ -1.56
COL3A1P02461 BX664727.1-201ENST00000416024 466 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 RPL30P16-201ENST00000419341 429 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 MTCYBP39-201ENST00000437562 491 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC5.28□□□□□ -1.56
COL3A1P02461 HSFY3P-201ENST00000444242 1191 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AL157884.3-201ENST00000448273 1184 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 NPM1P41-201ENST00000512920 831 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC010306.1-201ENST00000523223 1117 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.28□□□□□ -1.56
COL3A1P02461 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 OOSP1P2-201ENST00000579644 351 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC5.28□□□□□ -1.56
COL3A1P02461 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 AC091167.4-201ENST00000605079 184 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AP002802.2-201ENST00000605877 235 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC107952.2-201ENST00000606048 486 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC067838.1-201ENST00000606064 577 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC006133.1-201ENST00000617106 264 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AL590410.1-201ENST00000617925 333 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 AC093875.1-201ENST00000623688 504 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL3A1P02461 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 NCOA4P2-201ENST00000340589 1813 ntBASIC5.28□□□□□ -1.56
COL3A1P02461 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL3A1P02461 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.28□□□□□ -1.56
COL3A1P02461 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL3A1P02461 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL3A1P02461 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL3A1P02461 AC009501.3-201ENST00000605001 1352 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL3A1P02461 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL3A1P02461 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL3A1P02461 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL3A1P02461 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.27□□□□□ -1.57
COL3A1P02461 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.27□□□□□ -1.57
COL3A1P02461 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC5.27□□□□□ -1.57
COL3A1P02461 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
COL3A1P02461 MTCO1P21-201ENST00000416634 589 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC5.27□□□□□ -1.57
COL3A1P02461 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.27□□□□□ -1.57
COL3A1P02461 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC5.27□□□□□ -1.57
COL3A1P02461 OR10R1P-201ENST00000441524 1141 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.27□□□□□ -1.57
COL3A1P02461 AL133217.1-201ENST00000450980 425 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 ATG12P2-201ENST00000456830 416 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC5.27□□□□□ -1.57
COL3A1P02461 STMN1P2-201ENST00000508435 439 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 MTCYBP16-201ENST00000509187 1129 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 AC103833.1-201ENST00000517442 172 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 IGKV2-38-201ENST00000517443 247 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.27□□□□□ -1.57
COL3A1P02461 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.27□□□□□ -1.57
COL3A1P02461 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL3A1P02461 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.27□□□□□ -1.57
COL3A1P02461 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.27□□□□□ -1.57
COL3A1P02461 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.27□□□□□ -1.57
COL3A1P02461 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.27□□□□□ -1.57
COL3A1P02461 MIR3158-1-201ENST00000583596 81 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 AC005771.1-201ENST00000585581 349 ntBASIC5.27□□□□□ -1.57
COL3A1P02461 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms