Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
HLA-CQ95604 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 Y_RNA.496-201ENST00000384444 101 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 MIR130B-202ENST00000385018 82 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 RN7SKP296-201ENST00000411185 341 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 RPSAP35-201ENST00000413753 818 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
HLA-CQ95604 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 MTCO3P45-201ENST00000443036 613 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AL031584.1-201ENST00000447169 754 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 RN7SL610P-201ENST00000463845 291 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 RPL12P20-201ENST00000475538 479 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC6.87□□□□□ -1.31
HLA-CQ95604 RPS23P1-201ENST00000491662 432 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 RNU6-470P-201ENST00000515954 104 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 RNA5SP340-201ENST00000517132 107 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.87□□□□□ -1.31
HLA-CQ95604 AL049779.2-201ENST00000553847 315 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 AC007956.1-201ENST00000555623 542 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC007342.5-201ENST00000571340 2142 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 RN7SL208P-201ENST00000577964 296 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC6.87□□□□□ -1.31
HLA-CQ95604 AC016727.2-201ENST00000603988 621 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AL021918.2-201ENST00000613415 194 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 ATP5A1P2-202ENST00000616464 443 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 MIR6085-201ENST00000618314 110 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 AP001264.1-201ENST00000620602 703 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 LINC02495-203ENST00000636704 242 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC103710.2-202ENST00000641454 2853 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 AC105749.1-201ENST00000631338 2008 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 MFSD8-219ENST00000641228 2559 ntBASIC6.87□□□□□ -1.31
HLA-CQ95604 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
HLA-CQ95604 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
HLA-CQ95604 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
HLA-CQ95604 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.86□□□□□ -1.31
HLA-CQ95604 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.86□□□□□ -1.31
HLA-CQ95604 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 LINC00964-202ENST00000510897 3534 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
HLA-CQ95604 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 RNU6-562P-201ENST00000362731 107 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 Y_RNA.117-201ENST00000363294 101 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 RNU6-266P-201ENST00000364225 107 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 SNORD115-7-201ENST00000365306 82 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
HLA-CQ95604 RNU6-128P-201ENST00000383976 107 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 RPL9P21-201ENST00000392269 505 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC6.86□□□□□ -1.31
HLA-CQ95604 AC002553.2-201ENST00000453217 340 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 PPIAP7-201ENST00000454070 489 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.86□□□□□ -1.31
HLA-CQ95604 RNU7-59P-201ENST00000459101 61 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 AP001992.1-205ENST00000462248 379 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 AC005726.1-201ENST00000494679 427 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 AC068305.1-201ENST00000497406 726 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.86□□□□□ -1.31
HLA-CQ95604 AC093853.1-201ENST00000515689 483 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 SCARNA5-201ENST00000516201 276 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 RN7SKP238-201ENST00000516483 249 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 RNA5SP206-201ENST00000516703 121 ntBASIC6.86□□□□□ -1.31
HLA-CQ95604 EEF1B2P2-201ENST00000519625 676 ntBASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms