Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC007599.1-201ENST00000568688 1174 ntBASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC022726.1-201ENST00000587475 207 ntBASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC073544.2-201ENST00000601155 540 ntBASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AL392088.2-201ENST00000637607 285 ntBASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
ATG4AQ8WYN0 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 SAMMSON-226ENST00000642089 1582 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 Y_RNA.18-201ENST00000362461 102 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 RNU6-582P-201ENST00000362989 107 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL121978.1-201ENST00000402778 359 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL133264.1-201ENST00000407157 562 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 RPS15AP38-201ENST00000413110 372 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC006366.1-201ENST00000422002 759 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 MED14P1-201ENST00000430517 648 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 USP9YP14-201ENST00000430663 563 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC008072.1-201ENST00000434254 824 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 RPS27AP15-201ENST00000447672 466 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 SLC25A18P1-201ENST00000449385 454 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC079168.2-201ENST00000453977 416 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC010307.1-201ENST00000467206 836 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 RN7SL727P-201ENST00000482164 296 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL024509.2-201ENST00000493462 493 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC018442.3-201ENST00000523025 183 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL390334.1-201ENST00000556395 450 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC008759.1-201ENST00000589783 983 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 DEFB131E-202ENST00000602581 683 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AP001521.2-201ENST00000608772 546 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AP000254.1-201ENST00000609934 520 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC245297.2-201ENST00000610119 565 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AC005332.6-201ENST00000613178 446 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 EIF3FP1-201ENST00000613970 806 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 AL031667.3-201ENST00000620124 655 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 MKKS-204ENST00000639674 192 ntBASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ATG4AQ8WYN0 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 MAPK10-349ENST00000641767 3661 ntBASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 SUGT1P1-201ENST00000379514 476 ntBASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 SNORD116-23-201ENST00000384645 92 ntBASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 Y_RNA.553-201ENST00000384670 102 ntBASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 MTCO3P41-201ENST00000414801 328 ntBASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.87□□□□□ -1.63
ATG4AQ8WYN0 Z99497.1-201ENST00000421282 135 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms