Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
PTPN9P43378 SNORD113-6-201ENST00000363345 75 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 RNU1-44P-201ENST00000384453 163 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 RNY3P9-201ENST00000384727 106 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 MIR129-1-201ENST00000384972 72 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 MIR92A2-201ENST00000385299 75 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 CYB5AP4-201ENST00000396692 399 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 GLULP6-201ENST00000399502 913 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PTPN9P43378 SFR1P1-201ENST00000403720 688 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 RN7SKP167-201ENST00000411047 285 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC119751.6-201ENST00000416712 186 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 DPRXP1-201ENST00000426312 460 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 USP9YP11-201ENST00000427537 717 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 NPM1P24-201ENST00000428039 894 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.66□□□□□ -1.66
PTPN9P43378 RPL23AP1-201ENST00000428990 471 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTPN9P43378 USP9YP22-201ENST00000438971 294 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 EXTL2P1-201ENST00000446218 416 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 VN1R40P-201ENST00000455196 941 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.66□□□□□ -1.66
PTPN9P43378 USP9YP25-201ENST00000457708 443 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC053481.1-201ENST00000467217 306 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC104689.1-201ENST00000473356 768 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC008897.1-201ENST00000494006 347 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC084024.2-201ENST00000503480 791 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 SNORA3.4-201ENST00000515969 96 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 RNA5SP497-201ENST00000516081 97 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 OR4C2P-201ENST00000530855 1064 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC137768.1-201ENST00000549998 553 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AL442163.2-201ENST00000553912 710 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.66□□□□□ -1.66
PTPN9P43378 SLC25A36P1-201ENST00000590111 465 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC4.66□□□□□ -1.66
PTPN9P43378 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 AC097065.2-201ENST00000608159 533 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 TUSC7.1-201ENST00000610969 165 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AC023158.2-201ENST00000614876 543 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 uc_338.18-201ENST00000615451 175 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AL158196.1-201ENST00000616786 434 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 AP005019.3-201ENST00000620418 560 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.66□□□□□ -1.66
PTPN9P43378 MIR1322-201ENST00000638013 71 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTPN9P43378 AC006971.1-201ENST00000407916 4486 ntBASIC4.66□□□□□ -1.66
PTPN9P43378 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.66□□□□□ -1.66
PTPN9P43378 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.65□□□□□ -1.66
PTPN9P43378 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
PTPN9P43378 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
PTPN9P43378 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.65□□□□□ -1.66
PTPN9P43378 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.65□□□□□ -1.66
PTPN9P43378 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.65□□□□□ -1.66
PTPN9P43378 OR10J6P-201ENST00000289731 930 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RNA5SP505-201ENST00000364748 108 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
PTPN9P43378 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
PTPN9P43378 RNU6-398P-201ENST00000384143 109 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RNU6-1151P-201ENST00000384684 107 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 MIR192-201ENST00000384915 110 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
PTPN9P43378 AL078604.1-201ENST00000404609 466 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.65□□□□□ -1.67
PTPN9P43378 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.65□□□□□ -1.67
PTPN9P43378 UBTFL3-201ENST00000418934 1024 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RPL7AP25-201ENST00000423357 805 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RPEP3-201ENST00000425462 676 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.65□□□□□ -1.67
PTPN9P43378 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.65□□□□□ -1.67
PTPN9P43378 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.65□□□□□ -1.67
PTPN9P43378 HMGB1P48-201ENST00000446155 598 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 ARL2BPP10-201ENST00000446487 531 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.65□□□□□ -1.67
PTPN9P43378 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.65□□□□□ -1.67
PTPN9P43378 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
PTPN9P43378 PNPLA4P1-201ENST00000458328 305 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
PTPN9P43378 RPL21P71-201ENST00000465598 459 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RPS29P22-201ENST00000472363 168 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 RN7SL41P-201ENST00000476144 297 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 UBTFL6-201ENST00000477929 1024 ntBASIC4.65□□□□□ -1.67
PTPN9P43378 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.65□□□□□ -1.67
PTPN9P43378 RPL23AP72-201ENST00000492447 435 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms