Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
MSH3P20585 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
MSH3P20585 AC073055.1-201ENST00000456901 1621 ntBASIC4.28□□□□□ -1.72
MSH3P20585 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 AC011155.1-201ENST00000316512 456 ntBASIC4.28□□□□□ -1.72
MSH3P20585 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH3P20585 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH3P20585 RNU6-353P-201ENST00000364266 108 ntBASIC4.28□□□□□ -1.72
MSH3P20585 MIR92A2-201ENST00000385299 75 ntBASIC4.28□□□□□ -1.72
MSH3P20585 MTCO1P56-201ENST00000401674 224 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AL592293.2-201ENST00000422292 996 ntBASIC4.28□□□□□ -1.72
MSH3P20585 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH3P20585 RPS3AP54-201ENST00000435535 734 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC073143.1-201ENST00000436316 395 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.28□□□□□ -1.72
MSH3P20585 AC092013.1-201ENST00000438795 332 ntBASIC4.28□□□□□ -1.72
MSH3P20585 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 AL592437.1-201ENST00000443781 492 ntBASIC4.28□□□□□ -1.72
MSH3P20585 ZNF886P-201ENST00000450781 723 ntBASIC4.28□□□□□ -1.72
MSH3P20585 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.28□□□□□ -1.72
MSH3P20585 FGF7P3-201ENST00000454645 303 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC133473.1-201ENST00000455173 299 ntBASIC4.28□□□□□ -1.72
MSH3P20585 CDC42P1-201ENST00000456658 548 ntBASIC4.28□□□□□ -1.72
MSH3P20585 RNU7-140P-201ENST00000459546 60 ntBASIC4.28□□□□□ -1.72
MSH3P20585 RN7SL303P-201ENST00000469773 251 ntBASIC4.28□□□□□ -1.72
MSH3P20585 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AC023050.1-201ENST00000498198 304 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC083829.1-201ENST00000503756 657 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 AC025674.1-201ENST00000507074 324 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AC112673.1-201ENST00000513168 575 ntBASIC4.28□□□□□ -1.72
MSH3P20585 PRELID3BP4-201ENST00000515476 571 ntBASIC4.28□□□□□ -1.72
MSH3P20585 RNA5SP154-201ENST00000516193 111 ntBASIC4.28□□□□□ -1.72
MSH3P20585 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 AC069240.1-201ENST00000548774 375 ntBASIC4.28□□□□□ -1.72
MSH3P20585 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
MSH3P20585 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH3P20585 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH3P20585 ZNF92P3-201ENST00000596594 954 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC090948.2-201ENST00000607363 564 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC079395.3-201ENST00000615161 484 ntBASIC4.28□□□□□ -1.72
MSH3P20585 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.28□□□□□ -1.72
MSH3P20585 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.28□□□□□ -1.72
MSH3P20585 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH3P20585 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
MSH3P20585 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.27□□□□□ -1.73
MSH3P20585 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.27□□□□□ -1.73
MSH3P20585 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH3P20585 RNA5SP52-201ENST00000362448 134 ntBASIC4.27□□□□□ -1.73
MSH3P20585 SNORA62.2-201ENST00000364672 152 ntBASIC4.27□□□□□ -1.73
MSH3P20585 RNU6-549P-201ENST00000384433 107 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AF228730.1-201ENST00000397972 663 ntBASIC4.27□□□□□ -1.73
MSH3P20585 RNU4-22P-201ENST00000411058 166 ntBASIC4.27□□□□□ -1.73
MSH3P20585 RNU6-603P-201ENST00000411403 107 ntBASIC4.27□□□□□ -1.73
MSH3P20585 RPS23P10-201ENST00000416185 486 ntBASIC4.27□□□□□ -1.73
MSH3P20585 HIGD1AP15-201ENST00000416198 280 ntBASIC4.27□□□□□ -1.73
MSH3P20585 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC4.27□□□□□ -1.73
MSH3P20585 RBMY1KP-201ENST00000423480 476 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AL158073.1-201ENST00000426848 1104 ntBASIC4.27□□□□□ -1.73
MSH3P20585 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 RPS20P1-201ENST00000434853 354 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AL512326.1-201ENST00000443050 721 ntBASIC4.27□□□□□ -1.73
MSH3P20585 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH3P20585 H2AFZP6-201ENST00000444403 394 ntBASIC4.27□□□□□ -1.73
MSH3P20585 Z73417.1-201ENST00000447373 778 ntBASIC4.27□□□□□ -1.73
MSH3P20585 ABCF2P2-201ENST00000450549 296 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AC111193.1-201ENST00000504097 155 ntBASIC4.27□□□□□ -1.73
MSH3P20585 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.27□□□□□ -1.73
MSH3P20585 HMGB1P1-201ENST00000522557 636 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms