Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.5□□□□□ -1.85
COL6A3P12111 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A3P12111 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL6A3P12111 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL6A3P12111 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 KCTD9P6-201ENST00000522306 950 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.49□□□□□ -1.85
COL6A3P12111 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 Z83843.1-201ENST00000604070 3685 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AC020656.2-201ENST00000613291 5309 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
COL6A3P12111 AC007899.1-201ENST00000412776 775 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 NPM1P48-201ENST00000436002 853 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 HSPE1P6-201ENST00000479457 291 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.49□□□□□ -1.85
COL6A3P12111 UBA52P3-201ENST00000491303 382 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 CKS1BP2-201ENST00000497342 240 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AC009097.3-201ENST00000563557 1018 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A3P12111 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A3P12111 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 AC108751.2-201ENST00000469993 231 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 RN7SL20P-201ENST00000488827 297 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AC005242.1-201ENST00000585658 438 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 AC100793.4-201ENST00000613683 429 ntBASIC3.49□□□□□ -1.85
COL6A3P12111 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A3P12111 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC3.48□□□□□ -1.85
COL6A3P12111 AL049780.3-201ENST00000624612 1583 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 AC067945.1-201ENST00000342609 618 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 RNA5SP229-201ENST00000410809 99 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.48□□□□□ -1.85
COL6A3P12111 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.48□□□□□ -1.85
COL6A3P12111 RNA5SP367-201ENST00000516557 118 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
COL6A3P12111 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
COL6A3P12111 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.48□□□□□ -1.85
COL6A3P12111 AC078814.3-201ENST00000553036 491 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.48□□□□□ -1.85
COL6A3P12111 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.48□□□□□ -1.85
COL6A3P12111 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL6A3P12111 HCFC2P1-201ENST00000392864 1592 ntBASIC3.48□□□□□ -1.85
COL6A3P12111 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL6A3P12111 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
COL6A3P12111 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 DDX6P1-205ENST00000441966 1436 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 AP002512.4-202ENST00000641599 4530 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 RNA5SP184-201ENST00000411071 108 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 MRPL50P2-201ENST00000416821 482 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 AC117434.1-201ENST00000419971 836 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.47□□□□□ -1.85
COL6A3P12111 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.47□□□□□ -1.85
COL6A3P12111 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.47□□□□□ -1.85
COL6A3P12111 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC3.47□□□□□ -1.85
COL6A3P12111 AL035413.2-201ENST00000604801 525 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 AC015922.4-201ENST00000612568 690 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 AC068647.1-201ENST00000489539 2265 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.47□□□□□ -1.85
COL6A3P12111 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC3.47□□□□□ -1.85
COL6A3P12111 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.47□□□□□ -1.85
COL6A3P12111 RPS20P1-201ENST00000434853 354 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.47□□□□□ -1.85
COL6A3P12111 AC112184.1-201ENST00000505179 312 ntBASIC3.47□□□□□ -1.85
COL6A3P12111 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.47□□□□□ -1.85
COL6A3P12111 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL6A3P12111 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL6A3P12111 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.46□□□□□ -1.85
COL6A3P12111 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
COL6A3P12111 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC3.46□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms