Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
APOEP02649 TCEA1P2-201ENST00000420496 906 ntBASIC3.9□□□□□ -1.79
APOEP02649 HIGD1AP12-201ENST00000427832 281 ntBASIC3.9□□□□□ -1.79
APOEP02649 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.9□□□□□ -1.79
APOEP02649 SNORA71B-202ENST00000439232 272 ntBASIC3.9□□□□□ -1.79
APOEP02649 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
APOEP02649 AC006480.1-201ENST00000449887 378 ntBASIC3.9□□□□□ -1.79
APOEP02649 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.9□□□□□ -1.79
APOEP02649 MTCO3P20-201ENST00000454926 688 ntBASIC3.9□□□□□ -1.79
APOEP02649 RN7SL542P-201ENST00000467147 294 ntBASIC3.9□□□□□ -1.79
APOEP02649 AL049830.2-201ENST00000480072 201 ntBASIC3.9□□□□□ -1.79
APOEP02649 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.9□□□□□ -1.79
APOEP02649 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.9□□□□□ -1.79
APOEP02649 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.9□□□□□ -1.79
APOEP02649 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC3.9□□□□□ -1.79
APOEP02649 SUMO2P20-201ENST00000520803 283 ntBASIC3.9□□□□□ -1.79
APOEP02649 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.9□□□□□ -1.79
APOEP02649 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.9□□□□□ -1.79
APOEP02649 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.9□□□□□ -1.79
APOEP02649 MIR5187-201ENST00000583479 76 ntBASIC3.9□□□□□ -1.79
APOEP02649 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.9□□□□□ -1.79
APOEP02649 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.9□□□□□ -1.79
APOEP02649 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.9□□□□□ -1.79
APOEP02649 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.9□□□□□ -1.79
APOEP02649 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.9□□□□□ -1.79
APOEP02649 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
APOEP02649 AC233968.1-201ENST00000611212 1300 ntBASIC3.9□□□□□ -1.79
APOEP02649 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
APOEP02649 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.9□□□□□ -1.79
APOEP02649 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
APOEP02649 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.89□□□□□ -1.79
APOEP02649 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
APOEP02649 AC006504.1-201ENST00000562493 3666 ntBASIC3.89□□□□□ -1.79
APOEP02649 AC110792.3-201ENST00000595906 1614 ntBASIC3.89□□□□□ -1.79
APOEP02649 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
APOEP02649 RNA5SP424-201ENST00000390988 115 ntBASIC3.89□□□□□ -1.79
APOEP02649 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
APOEP02649 OR4F13P-201ENST00000428478 931 ntBASIC3.89□□□□□ -1.79
APOEP02649 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.89□□□□□ -1.79
APOEP02649 NANOGP10-201ENST00000453325 895 ntBASIC3.89□□□□□ -1.79
APOEP02649 RPL7P15-201ENST00000461190 712 ntBASIC3.89□□□□□ -1.79
APOEP02649 RPL7P48-201ENST00000461513 746 ntBASIC3.89□□□□□ -1.79
APOEP02649 TRAV31-201ENST00000502780 342 ntBASIC3.89□□□□□ -1.79
APOEP02649 RNU6-1231P-201ENST00000517185 103 ntBASIC3.89□□□□□ -1.79
APOEP02649 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.89□□□□□ -1.79
APOEP02649 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.89□□□□□ -1.79
APOEP02649 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.89□□□□□ -1.79
APOEP02649 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.89□□□□□ -1.79
APOEP02649 MIR3186-201ENST00000577404 85 ntBASIC3.89□□□□□ -1.79
APOEP02649 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.89□□□□□ -1.79
APOEP02649 AL163642.2-201ENST00000604722 1019 ntBASIC3.89□□□□□ -1.79
APOEP02649 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.89□□□□□ -1.79
APOEP02649 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
APOEP02649 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
APOEP02649 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.89□□□□□ -1.79
APOEP02649 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 AC009229.4-201ENST00000623854 1947 ntBASIC3.88□□□□□ -1.79
APOEP02649 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
APOEP02649 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
APOEP02649 RNU6-673P-201ENST00000365084 104 ntBASIC3.88□□□□□ -1.79
APOEP02649 SNORA62.3-201ENST00000365110 153 ntBASIC3.88□□□□□ -1.79
APOEP02649 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 ARF4P2-201ENST00000430209 526 ntBASIC3.88□□□□□ -1.79
APOEP02649 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.88□□□□□ -1.79
APOEP02649 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.88□□□□□ -1.79
APOEP02649 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 ACTR3P3-201ENST00000480448 893 ntBASIC3.88□□□□□ -1.79
APOEP02649 UBE2CP3-201ENST00000502715 450 ntBASIC3.88□□□□□ -1.79
APOEP02649 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 RN7SKP209-201ENST00000516888 304 ntBASIC3.88□□□□□ -1.79
APOEP02649 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 PDCL2P2-201ENST00000533651 189 ntBASIC3.88□□□□□ -1.79
APOEP02649 AC006960.3-201ENST00000561845 705 ntBASIC3.88□□□□□ -1.79
APOEP02649 AC034105.4-201ENST00000568304 277 ntBASIC3.88□□□□□ -1.79
APOEP02649 AC005972.3-201ENST00000606304 481 ntBASIC3.88□□□□□ -1.79
APOEP02649 AL592494.3-201ENST00000609485 464 ntBASIC3.88□□□□□ -1.79
APOEP02649 AC004943.3-201ENST00000624116 600 ntBASIC3.88□□□□□ -1.79
APOEP02649 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.88□□□□□ -1.79
APOEP02649 PRO1804-201ENST00000623780 2050 ntBASIC3.88□□□□□ -1.79
APOEP02649 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
APOEP02649 CR381670.1-201ENST00000624291 1693 ntBASIC3.87□□□□□ -1.79
APOEP02649 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
APOEP02649 RNU6-697P-201ENST00000363348 107 ntBASIC3.87□□□□□ -1.79
APOEP02649 U8.11-201ENST00000384699 133 ntBASIC3.87□□□□□ -1.79
APOEP02649 U8.12-201ENST00000384701 133 ntBASIC3.87□□□□□ -1.79
APOEP02649 MT-TP-201ENST00000387461 68 ntBASIC3.87□□□□□ -1.79
APOEP02649 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.87□□□□□ -1.79
APOEP02649 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.87□□□□□ -1.79
APOEP02649 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.87□□□□□ -1.79
APOEP02649 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms