Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC006466.1-201ENST00000438721 289 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL591623.2-201ENST00000449978 222 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC243772.1-201ENST00000451620 410 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 RPL7AP10-201ENST00000481016 791 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC104685.1-201ENST00000502445 371 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC025674.1-201ENST00000507074 324 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 HMGB3P13-201ENST00000511263 607 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 MTND3P5-201ENST00000512798 333 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 RNA5SP43-201ENST00000516559 110 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 NDUFA5P2-201ENST00000519723 344 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 ARL2BPP5-201ENST00000523141 481 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 SMARCE1P4-201ENST00000523647 241 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 HIGD1AP10-201ENST00000527837 282 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL390334.1-201ENST00000556395 450 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC010200.2-201ENST00000605098 235 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC069304.2-201ENST00000605154 435 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC008083.4-201ENST00000615076 444 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL031667.3-201ENST00000620124 655 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC087385.3-201ENST00000620477 187 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC008443.7-201ENST00000622195 246 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 OR2L1P-202ENST00000641567 1023 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL445437.1-201ENST00000623157 3087 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL672167.1-204ENST00000641875 3017 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
PTCHD3Q3KNS1 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.84□□□□□ -1.64
PTCHD3Q3KNS1 AL118496.1-201ENST00000440201 1812 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 KARSP3-201ENST00000571212 1504 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 Y_RNA.18-201ENST00000362461 102 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 Y_RNA.25-201ENST00000362528 102 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 RN7SKP95-201ENST00000362860 303 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 RNA5SP428-201ENST00000365129 132 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 RPL37P18-201ENST00000411602 243 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 RPL23AP39-201ENST00000415533 405 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 COX6B1P1-201ENST00000415962 213 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 CHEK2P3-201ENST00000416118 248 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC092634.6-201ENST00000418558 192 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC062016.2-201ENST00000420950 676 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 MTND2P20-201ENST00000440805 661 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 BTF3P6-201ENST00000448054 499 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 HMGN3P1-201ENST00000453847 193 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC002456.2-201ENST00000509356 380 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC093281.2-201ENST00000510153 597 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 SNORA48.10-201ENST00000516965 160 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 SERPINE4P-201ENST00000554978 281 ntBASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD3Q3KNS1 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms