Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXC9P31274 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 RNU4-7P-201ENST00000364758 141 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 RPL17P50-201ENST00000396131 546 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 ATP5A1P2-201ENST00000412323 255 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC9P31274 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC9P31274 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 MTCYBP12-201ENST00000440559 1134 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC023512.1-201ENST00000444513 499 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 CALM1P2-201ENST00000452941 448 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXC9P31274 CLIC4P1-201ENST00000453177 535 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 APOOP2-201ENST00000461561 539 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 PLGLA-201ENST00000465668 449 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC005726.1-201ENST00000494679 427 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 RAC1P2-201ENST00000511164 579 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXC9P31274 OR8I1P-201ENST00000529291 931 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXC9P31274 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXC9P31274 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 U3.45-201ENST00000607547 219 ntBASIC5.08□□□□□ -1.6
HOXC9P31274 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXC9P31274 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXC9P31274 HSPA8P19-201ENST00000505359 1517 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
HOXC9P31274 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXC9P31274 RNU6-252P-201ENST00000363232 107 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXC9P31274 PTMAP5-201ENST00000393073 333 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 AC245052.5-201ENST00000416320 649 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 SEC63P1-201ENST00000425785 1258 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 HSPE1P16-201ENST00000426640 348 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 RPL23AP4-201ENST00000427757 463 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AL159987.2-201ENST00000432754 307 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AL645931.1-201ENST00000439737 410 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXC9P31274 HMGB1P5-202ENST00000451497 985 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 RPL31P61-201ENST00000496160 376 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC093801.2-201ENST00000503966 1050 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 MTATP6P9-201ENST00000515039 680 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 RNA5SP164-201ENST00000516533 110 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXC9P31274 AP003355.1-201ENST00000518956 587 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC9P31274 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXC9P31274 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 AL121834.1-201ENST00000572284 509 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXC9P31274 AL391001.1-201ENST00000602747 715 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXC9P31274 SNORA62.6-201ENST00000606322 83 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC112503.2-201ENST00000609005 552 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AP005229.2-201ENST00000609980 697 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC005156.1-201ENST00000613371 573 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 TTC39DP-201ENST00000416781 1688 ntBASIC5.07□□□□□ -1.6
HOXC9P31274 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXC9P31274 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXC9P31274 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 AL606537.1-201ENST00000607258 2011 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXC9P31274 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 RNU6-1005P-201ENST00000384519 107 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 MIR34B-201ENST00000385076 84 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 RNU6-244P-201ENST00000391028 104 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 RNU2-17P-201ENST00000410290 190 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 HMGB3P10-201ENST00000434734 572 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.06□□□□□ -1.6
HOXC9P31274 VN1R25P-201ENST00000443385 738 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms