Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.3□□□□□ -1.72
CLDN3O15551 AC026402.1-201ENST00000513642 170 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.3□□□□□ -1.72
CLDN3O15551 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.3□□□□□ -1.72
CLDN3O15551 NDUFA5P2-201ENST00000519723 344 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLDN3O15551 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.3□□□□□ -1.72
CLDN3O15551 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.3□□□□□ -1.72
CLDN3O15551 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.3□□□□□ -1.72
CLDN3O15551 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.3□□□□□ -1.72
CLDN3O15551 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLDN3O15551 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.3□□□□□ -1.72
CLDN3O15551 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.3□□□□□ -1.72
CLDN3O15551 AL591424.2-201ENST00000617023 128 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.3□□□□□ -1.72
CLDN3O15551 CDRT1-208ENST00000630868 794 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 AC009452.1-201ENST00000640823 606 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 AC090229.1-201ENST00000590983 1609 ntBASIC4.3□□□□□ -1.72
CLDN3O15551 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.3□□□□□ -1.72
CLDN3O15551 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.29□□□□□ -1.72
CLDN3O15551 AC134882.1-201ENST00000603738 1676 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 ZNF90P1-201ENST00000480493 1951 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLDN3O15551 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLDN3O15551 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 RNA5SP97-201ENST00000365006 84 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 TAF9BP2-201ENST00000400856 499 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 XKRYP4-201ENST00000414395 483 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 RPL17P36-201ENST00000420302 549 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AC092647.1-201ENST00000420654 287 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.29□□□□□ -1.72
CLDN3O15551 HMGB1P37-201ENST00000439613 609 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 XKRYP5-201ENST00000449659 483 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 HMGB3P22-202ENST00000451823 572 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 FGF7P3-201ENST00000454645 303 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.29□□□□□ -1.72
CLDN3O15551 OR9M1P-201ENST00000459641 921 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 CABYRP1-201ENST00000465493 1045 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 VWA8P1-201ENST00000510889 176 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.29□□□□□ -1.72
CLDN3O15551 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.29□□□□□ -1.72
CLDN3O15551 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.29□□□□□ -1.72
CLDN3O15551 AC106785.1-201ENST00000565935 262 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 RN7SL703P-201ENST00000578485 302 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 AC018618.2-201ENST00000604770 446 ntBASIC4.29□□□□□ -1.72
CLDN3O15551 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CLDN3O15551 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLDN3O15551 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CLDN3O15551 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CLDN3O15551 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.29□□□□□ -1.72
CLDN3O15551 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.29□□□□□ -1.72
CLDN3O15551 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLDN3O15551 AC018555.1-201ENST00000567548 1980 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CLDN3O15551 Y_RNA.126-201ENST00000363382 111 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 RNU6-98P-201ENST00000384173 107 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLDN3O15551 HMGB1P10-201ENST00000395823 563 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AL356057.1-202ENST00000402263 756 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC011742.1-201ENST00000431448 434 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 RPS6P12-201ENST00000432491 726 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.28□□□□□ -1.72
CLDN3O15551 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.28□□□□□ -1.72
CLDN3O15551 AC105402.2-201ENST00000438503 358 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 RPS29P7-201ENST00000439662 171 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AL691517.1-201ENST00000440833 1235 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 RANP8-201ENST00000444720 713 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.28□□□□□ -1.72
CLDN3O15551 AL645939.1-201ENST00000453429 797 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 FTH1P2-201ENST00000466086 412 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC087369.1-201ENST00000520775 996 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.28□□□□□ -1.72
CLDN3O15551 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.28□□□□□ -1.72
CLDN3O15551 AC015726.1-201ENST00000602353 681 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC012467.1-201ENST00000607740 256 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC090912.3-201ENST00000609775 533 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AL356490.1-201ENST00000623079 479 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 AC090617.9-201ENST00000623751 147 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 ATE1-AS1-202ENST00000636460 506 ntBASIC4.28□□□□□ -1.72
CLDN3O15551 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
CLDN3O15551 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CLDN3O15551 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.28□□□□□ -1.72
CLDN3O15551 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.73
CLDN3O15551 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CLDN3O15551 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.27□□□□□ -1.73
CLDN3O15551 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.27□□□□□ -1.73
CLDN3O15551 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.27□□□□□ -1.73
CLDN3O15551 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CLDN3O15551 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.27□□□□□ -1.73
CLDN3O15551 RN7SKP44-201ENST00000363602 316 ntBASIC4.27□□□□□ -1.73
CLDN3O15551 RNU1-87P-201ENST00000363727 170 ntBASIC4.27□□□□□ -1.73
CLDN3O15551 RNU1-64P-201ENST00000365443 163 ntBASIC4.27□□□□□ -1.73
CLDN3O15551 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.27□□□□□ -1.73
CLDN3O15551 MIR1303-201ENST00000408625 86 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms