Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-1225P-201ENST00000516336 65 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 RNU6-232P-201ENST00000517144 64 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 NDUFAF4P1-201ENST00000559425 519 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 MIR4284-201ENST00000578924 81 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC011939.3-201ENST00000613686 466 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC090246.1-201ENST00000616499 426 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AC073348.1-201ENST00000623002 331 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AP001273.1-201ENST00000624493 3152 ntBASIC4.8□□□□□ -1.64
VPS4AQ9UN37 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS4AQ9UN37 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MTND4P34-201ENST00000572715 1371 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 IL6STP1-201ENST00000346911 1020 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC234781.2-201ENST00000426370 994 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 RPS27AP15-201ENST00000447672 466 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 BTF3P6-201ENST00000448054 499 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AL356981.1-201ENST00000454879 684 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MTND3P7-201ENST00000474435 343 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC091435.1-201ENST00000505442 584 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC109445.1-201ENST00000512356 383 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 TCP11X3P-202ENST00000514289 1254 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC084824.1-201ENST00000550917 1005 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 PARP1P2-201ENST00000556806 195 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 OR4K7P-201ENST00000580232 945 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 VN1R84P-201ENST00000593697 235 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC146944.4-201ENST00000602697 718 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC009220.3-201ENST00000604318 586 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AP005432.2-201ENST00000608162 586 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC087385.3-201ENST00000620477 187 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC068620.4-201ENST00000636730 1182 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC107068.1-201ENST00000563286 4218 ntBASIC4.79□□□□□ -1.64
VPS4AQ9UN37 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS4AQ9UN37 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 SDAD1P1-202ENST00000524156 2051 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC005539.1-201ENST00000443768 1479 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 RNU6-553P-201ENST00000364047 96 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 RNU6-304P-201ENST00000364855 107 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 RNU6-178P-201ENST00000384631 104 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AL590084.2-201ENST00000401481 382 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 RPS24P12-201ENST00000402084 394 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 370.6 ms