Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 Y_RNA.97-201ENST00000363094 102 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 SNORA40.3-201ENST00000390964 122 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 SLC9B1P2-201ENST00000398120 1184 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AIMP1P1-201ENST00000418670 937 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 SPRYD7P1-201ENST00000443861 570 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MTCO1P27-201ENST00000448269 226 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MTND6P6-201ENST00000478031 263 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 TMED11P-201ENST00000479478 690 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 RN7SL184P-201ENST00000488308 297 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC108693.1-201ENST00000496068 432 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 TMEM251P1-201ENST00000503717 318 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 GLUD1P3-202ENST00000508551 200 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC024589.1-201ENST00000512207 263 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MTND4LP26-201ENST00000518144 282 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL133457.1-201ENST00000564251 987 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MIR4528-201ENST00000577763 90 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC005191.1-201ENST00000603950 358 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 CRYM-AS1-204ENST00000637983 556 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 AC144833.1-201ENST00000567953 4089 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 HSPA8P14-201ENST00000552265 1805 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 OR11H5P-202ENST00000641612 1325 ntBASIC5.46□□□□□ -1.54
TRIM39Q9HCM9 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC006206.1-201ENST00000544842 3387 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC104964.3-201ENST00000606115 2860 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 SNORA51.1-201ENST00000363243 140 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RNU6-259P-201ENST00000383999 107 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RNU6-1293P-201ENST00000384077 107 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 SNORA51.6-201ENST00000384151 125 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 EIF5P1-201ENST00000400019 1231 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 OR8G2P-201ENST00000412796 908 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 Z97055.1-201ENST00000419730 712 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 COX6CP17-201ENST00000421389 185 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RN7SL188P-201ENST00000469842 285 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RN7SL583P-201ENST00000475692 287 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 LARP1BP2-201ENST00000486594 519 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 EIF3LP3-201ENST00000495197 822 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC109927.2-201ENST00000506416 303 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RPL37P25-201ENST00000507308 276 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 ATP5LP3-201ENST00000514223 304 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 OR4A43P-201ENST00000532938 908 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC079395.2-201ENST00000610982 737 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RNU6-156P-201ENST00000621869 107 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC021242.1-201ENST00000507315 2035 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 AC006378.2-201ENST00000623178 2476 ntBASIC5.45□□□□□ -1.54
TRIM39Q9HCM9 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 GVINP1-202ENST00000531871 7271 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 MTCO1P11-201ENST00000429111 1528 ntBASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
TRIM39Q9HCM9 Y_RNA.41-201ENST00000362646 102 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms