Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RPL23AP59-201ENST00000399415 461 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 RNA5SP36-201ENST00000410197 133 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 VN1R51P-201ENST00000411675 945 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 UBE2V1P9-201ENST00000414760 368 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 MFSD13B-201ENST00000420133 1290 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 RPL12P28-201ENST00000430852 489 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 KCTD9P3-201ENST00000434597 1169 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 RPL23AP46-201ENST00000438548 490 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC092809.1-201ENST00000441469 474 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AL500522.2-201ENST00000448562 343 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 ANP32BP2-201ENST00000454525 545 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 TVP23BP2-201ENST00000455082 615 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 NDUFB5P1-201ENST00000508134 564 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC093824.1-201ENST00000508796 343 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 HIGD1AP18-201ENST00000520730 278 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AP003066.2-201ENST00000529375 555 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 APPL2-203ENST00000546731 684 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 YWHAZP1-201ENST00000556286 722 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC022968.1-201ENST00000567372 442 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 RPL23AP87-202ENST00000573039 466 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC018618.2-201ENST00000604770 446 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC011374.2-201ENST00000607135 526 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 VN1R9P-201ENST00000614184 867 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC090246.1-201ENST00000616499 426 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC016769.4-201ENST00000616893 535 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AP004607.9-201ENST00000618202 316 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC083865.1-201ENST00000636634 831 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AL139811.1-201ENST00000424779 2299 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC100871.1-201ENST00000507871 1456 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 CR788268.1-201ENST00000603931 1809 ntBASIC3.98□□□□□ -1.77
CCDC28BQ9BUN5 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RNU6-481P-201ENST00000384194 107 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RNU6-532P-201ENST00000384318 107 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RPS27AP11-201ENST00000402798 447 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 HMGB1P13-201ENST00000406019 642 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 SNORA11.5-201ENST00000408163 128 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 P2RY10P2-201ENST00000416730 913 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC005189.1-201ENST00000431286 310 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC011998.1-201ENST00000433403 117 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 VN1R54P-201ENST00000435210 1049 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 PHBP16-201ENST00000446318 950 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 HMGB3P8-201ENST00000449709 577 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 PPIAP20-201ENST00000449839 135 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RNU7-170P-201ENST00000459303 61 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC018638.3-201ENST00000461273 132 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 SS18L2P2-201ENST00000583960 235 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC008507.2-201ENST00000588402 1176 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RNVU1-4-201ENST00000612985 164 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 RMST_10.1-201ENST00000616309 154 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC010435.1-201ENST00000623353 1177 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 AC009452.1-201ENST00000640823 606 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 UBE3AP2-201ENST00000429033 2259 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 MTCO1P14-201ENST00000441695 1559 ntBASIC3.97□□□□□ -1.77
CCDC28BQ9BUN5 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms