Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 PCMTD1P7-201ENST00000634506 357 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC027228.2-201ENST00000567141 2154 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SMG1P4-204ENST00000523028 4131 ntBASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.86□□□□□ -1.63
PTCHD3Q3KNS1 MAPK10-349ENST00000641767 3661 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 Y_RNA.194-201ENST00000363985 102 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 MIR506-201ENST00000384998 124 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL121978.1-201ENST00000402778 359 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 PIGPP2-201ENST00000411569 458 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 FCF1P2-201ENST00000415284 583 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 OR7E125P-201ENST00000443450 846 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 TAF9P1-201ENST00000445421 515 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL360221.1-201ENST00000445989 335 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 MTCO3P16-201ENST00000454456 754 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL356981.1-201ENST00000454879 684 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 TAF9P2-201ENST00000454958 515 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 RPS17P2-201ENST00000461663 408 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 SETP11-201ENST00000473027 690 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 RN7SL244P-201ENST00000493405 297 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 COX6B1P5-201ENST00000509843 249 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL671862.1-201ENST00000515851 349 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC106038.2-201ENST00000520706 568 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 RPL23AP53-201ENST00000521854 457 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC007115.1-201ENST00000546853 234 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 MIR4472-2-201ENST00000582069 67 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 MIR4480-201ENST00000582492 71 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AC006270.3-201ENST00000605967 1036 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 AL158063.1-201ENST00000615349 536 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 ZNF833P-201ENST00000424938 1494 ntBASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD3Q3KNS1 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 IRF5P1-201ENST00000504852 2164 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 USP9YP4-201ENST00000424401 1745 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 NCLP2-201ENST00000416078 1462 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 SNORA73.1-201ENST00000363107 205 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 RNU6-251P-201ENST00000363235 104 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 RNU6-216P-201ENST00000363282 104 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL078599.1-201ENST00000402075 293 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 LINC00993-201ENST00000420453 540 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 OR2AM1P-201ENST00000422137 422 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 NPM1P24-201ENST00000428039 894 ntBASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD3Q3KNS1 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms